Evidence map›Paper›PMID 17907811›Full record

ArticlePLoS genetics2007

Gene expression programs of human smooth muscle cells: tissue-specific differentiation and prognostic significance in breast cancers.

Jen-Tsan Chi, Edwin H Rodriguez, Zhen Wang, Dimitry S A Nuyten, Sayan Mukherjee, Matt van de Rijn, Marc J van de Vijver, Trevor Hastie, Patrick O Brown

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Reviving Cav1.2 as an attractive drug target to treat bladder dysfunction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Review
  10. Review
  11. Article
  12. Hox-Positive Adult Mesenchymal Stromal Cells: Beyond Positional Identity.Frontiers in cell and developmental biology · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Role of Hox genes in stem cell differentiation.World journal of stem cells · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jen-Tsan ChiThe Institute for Genome Sciences and Policy, Duke University School of Medicine, Durham, North Carolina, USA.
Edwin H Rodriguez
Zhen Wang
Dimitry S A Nuyten
Sayan Mukherjee
Matt van de Rijn
Marc J van de Vijver
Trevor Hastie
Patrick O Brown
Stanford University · USDuke University · USThe Netherlands Cancer Institute · NLHoward Hughes Medical Institute · US

Funding

GENE EXPRESSION IN CANCER BY MICROARRAY HYBRIDIZATIONR01CA077097 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1997 to 2010
$8.7M
Gene expression programs of lactic acidosis in human cancersR01CA125618 · NCI · DUKE UNIVERSITY · PI CHI, JEN-TSAN ASHLEY · 2007 to 2016
$3.3M
Molecular Characterization of Leiomyosarcoma and GISTR01CA112270 · NCI · STANFORD UNIVERSITY · PI VAN DE RIJN, JAN MATT · 2005 to 2014
$3.0M
Extending and Interpreting Molecular Portraits of CancerR01CA111487 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 2006 to 2010
$1.4M
NCI NIH HHS CA111487NCI NIH HHS CA112270NCI NIH HHS CA125618NCI NIH HHS CA77097NCI NIH HHS R01 CA077097NCI NIH HHS R01 CA111487NCI NIH HHS R01 CA112270NCI NIH HHS R01 CA125618
6 · The paper itself

Abstract

Smooth muscle is present in a wide variety of anatomical locations, such as blood vessels, various visceral organs, and hair follicles. Contraction of smooth muscle is central to functions as diverse as peristalsis, urination, respiration, and the maintenance of vascular tone. Despite the varied physiological roles of smooth muscle cells (SMCs), we possess only a limited knowledge of the heterogeneity underlying their functional and anatomic specializations. As a step toward understanding the intrinsic differences between SMCs from different anatomical locations, we used DNA microarrays to profile global gene expression patterns in 36 SMC samples from various tissues after propagation under defined conditions in cell culture. Significant variations were found between the cells isolated from blood vessels, bronchi, and visceral organs. Furthermore, pervasive differences were noted within the visceral organ subgroups that appear to reflect the distinct molecular pathways essential for organogenesis as well as those involved in organ-specific contractile and physiological properties. Finally, we sought to understand how this diversity may contribute to SMC-involving pathology. We found that a gene expression signature of the responses of vascular SMCs to serum exposure is associated with a significantly poorer prognosis in human cancers, potentially linking vascular injury response to tumor progression.

Indexed as

Cell DifferentiationGene ExpressionBiomarkersBreast NeoplasmsBronchiCell Culture TechniquesCell LineageCells, CulturedCluster AnalysisDNA, ComplementaryEndothelial CellsFemaleGene Expression ProfilingGenes, HomeoboxHumansMuscle, SmoothBiomarkersDNA, Complementary

Identifiers

PMID17907811
PMCPMC1994710
OpenAlexW2044530971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.