Evidence map›Paper›PMID 17904609›Full record

ArticleVirology2008

Changes in simian immunodeficiency virus reverse transcriptase alleles that appear during infection of macaques enhance infectivity and replication in CD4+ T cells.

Tasha Biesinger, Monica T Yu Kimata, Jason T Kimata

Open access · greenAbstract read
In one paragraph

Article in Virology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tasha BiesingerDepartment of Molecular Virology and Microbiology, BCM385, Room 811D, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Monica T Yu Kimata
Jason T Kimata
Baylor College of Medicine · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 1985 to 2011
$161.1M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
Replicative fitness of SIV variantsR01AI047725 · NIAID · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI KIMATA, JASON T. · 2000 to 2010
$3.7M
RESEARCH TRAINING PROGRAM IN MOLECULAR VIROLOGYT32AI007471 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RAMIG, ROBERT FRANKLIN · 1996 to 2010
$2.6M
Replicative fitness of SIV variantsR56AI047725 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI KIMATA, JASON T · 2005 to 2005
$315k
NCRR NIH HHS P51 RR000166NCRR NIH HHS RR00166NIAID NIH HHS AI47725NIAID NIH HHS P30 AI036211NIAID NIH HHS P30AI036211NIAID NIH HHS R01 AI047725NIAID NIH HHS R56 AI047725NIAID NIH HHS T32 AI007471NIAID NIH HHS T32-AI07471
6 · The paper itself

Abstract

We previously showed that a slowly replicating, minimally pathogenic clone of simian immunodeficiency virus (SIV), SIVmneCl8, evolves increased ability to replicate in T cells with the onset of AIDS in pig-tailed macaques. Moreover, molecular clones derived from late stages of infection (SIVmne170 and SIVmne027) replicate to high levels in vivo compared to SIVmneCl8. Here, we investigated the role of rt mutations in SIVmne variant replication. We demonstrate selection for rt alleles that enhance viral infectivity and replication capacity in CD4(+) T cells. Moreover, the ability of SIVmne to be induced from resting CD4(+) T cells by anti-CD3/CD28 stimulation is more strongly influenced by the variant rt alleles than nef alleles. Taken together, our data underscore the importance of RT determinants for pathogenicity of SIV and for the capacity to replicate in CD4(+) T cell populations.

Indexed as

AllelesMutationVirus ReplicationAmino Acid SequenceAnimalsCD4-Positive T-LymphocytesCell LineDendritic CellsLymphocyte ActivationMacaca nemestrinaMolecular Sequence DataMutagenesis, Site-DirectedRNA-Directed DNA PolymeraseSequence Analysis, DNASimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusRNA-Directed DNA Polymerase

Identifiers

PMID17904609
PMCPMC2196132
OpenAlexW2054633933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.