ReviewBMC bioinformatics2007
Computational analyses of eukaryotic promoters.
Review in BMC bioinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.
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Who cites it
24 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Genetic mechanisms underlying spermatic and testicular traits within and among cattle breeds: systematic review and prioritization of GWAS results.Journal of animal science · 2018Pooled it
- Dissecting thebioRxiv : the preprint server for biology · 2024Article
- Transcription Factor Binding Site in Promoter Determines the Pattern of Plasmid-Based Transgene Expression In Vivo.Pharmaceutics · 2024Article
- PromGER: Promoter Prediction Based on Graph Embedding and Ensemble Learning for Eukaryotic Sequence.Genes · 2023Article
- Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction.Briefings in bioinformatics · 2022Article
- Identification of functional tumor necrosis factor-alpha promoter variants associated withWorld journal of gastroenterology · 2022Observational
- H3K4/K9 acetylation and Lr28-mediated expression of six leaf rust responsive genes in wheat (Triticum aestivum).Molecular genetics and genomics : MGG · 2019Article
- Transcriptome sequencing of microglial cells stimulated with TLR3 and TLR4 ligands.BMC genomics · 2015Article
- Dual RNA sequencing reveals the expression of unique transcriptomic signatures in lipopolysaccharide-induced BV-2 microglial cells.PloS one · 2015Article
- Genetic and functional analysis of the NKX2-5 gene promoter in patients with ventricular septal defects.Pediatric cardiology · 2012Article
- Characterization and functional analysis of the 5'-flanking promoter region of the mouse Tcf3 gene.Molecular and cellular biochemistry · 2012Article
- Identification of a novel temperature sensitive promoter in CHO cells.BMC biotechnology · 2011Article
- Article
- Nucleotide composition-linked divergence of vertebrate core promoter architecture.Genome research · 2011Article
- An ANN-GA model based promoter prediction in Arabidopsis thaliana using tilling microarray data.Bioinformation · 2011Article
- Article
- Computational design and application of endogenous promoters for transcriptionally targeted gene therapy for rheumatoid arthritis.Molecular therapy : the journal of the American Society of Gene Therapy · 2009Article
- DISCOVER: a feature-based discriminative method for motif search in complex genomes.Bioinformatics (Oxford, England) · 2009Article
- High-resolution human core-promoter prediction with CoreBoost_HM.Genome research · 2009Article
- A primer on regression methods for decoding cis-regulatory logic.PLoS computational biology · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Computational analysis of eukaryotic promoters is one of the most difficult problems in computational genomics and is essential for understanding gene expression profiles and reverse-engineering gene regulation network circuits. Here I give a basic introduction of the problem and recent update on both experimental and computational approaches. More details may be found in the extended references. This review is based on a summer lecture given at Max Planck Institute at Berlin in 2005.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.