Evidence map›Paper›PMID 17903261›Full record

ArticleBMC bioinformatics2007

Computational genes: a tool for molecular diagnosis and therapy of aberrant mutational phenotype.

Israel M Martínez-Pérez, Gong Zhang, Zoya Ignatova, Karl-Heinz Zimmermann

Abstract read
In one paragraph

Article in BMC bioinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Israel M Martínez-PérezInstitute of Computer Technology, Hamburg University of Technology, Hamburg 21073, Germany. martinez-perez@tu-harburg.de
Gong Zhang
Zoya Ignatova
Karl-Heinz Zimmermann

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA finite state machine manipulating information-carrying DNA strands can be used to perform autonomous molecular-scale computations at the cellular level.

resultsWe propose a new finite state machine able to detect and correct aberrant molecular phenotype given by mutated genetic transcripts. The aberrant mutations trigger a cascade reaction: specific molecular markers as input are released and induce a spontaneous self-assembly of a wild type protein or peptide, while the mutational disease phenotype is silenced. We experimentally demostrated in in vitro translation system that a viable protein can be autonomously assembled.

conclusionOur work demostrates the basic principles of computational genes and particularly, their potential to detect mutations, and as a response thereafter administer an output that suppresses the aberrant disease phenotype and/or restores the lost physiological function.

Indexed as

Computers, MolecularModels, GeneticComputer SimulationDNADNA Mutational AnalysisGene TargetingGenetic Predisposition to DiseaseGenetic TestingGenetic TherapyMutationPhenotypeDNA

Identifiers

PMID17903261
PMCPMC2175521

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.