Evidence map›Paper›PMID 17900117›Full record

ArticleJournal of the American Chemical Society2007

DNA strand damage product analysis provides evidence that the tumor cell-specific cytotoxin tirapazamine produces hydroxyl radical and acts as a surrogate for O(2).

Goutam Chowdhury, Venkatraman Junnotula, J Scott Daniels, Marc M Greenberg, Kent S Gates

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  9. Enzyme mechanism-based, oxidative DNA-protein cross-links formed with DNA polymerase β in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
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  16. Targeting hypoxia in cancer therapy.Nature reviews. Cancer · 2011
    Review
  17. Article
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  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Goutam ChowdhuryDepartment of Chemistry and Biochemistry, University of Missouri Columbia, Columbia, MO 65211, USA.
Venkatraman Junnotula
J Scott Daniels
Marc M Greenberg
Kent S Gates
Johns Hopkins University · USUniversity of Missouri · US

Funding

Mechanistic Studies of Nucleic Acid Damage and Their Applications.R01GM054996 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREENBERG, MARC M · 1997 to 2019
$5.4M
DNA Damage by Tumor Cell-Specific N-OxidesR01CA100757 · NCI · UNIVERSITY OF MISSOURI-COLUMBIA · PI GATES, KENT S · 2003 to 2006
$677k
NCI NIH HHS CA100757NCI NIH HHS R01 CA100757NIGMS NIH HHS GM054996NIGMS NIH HHS R01 GM054996
6 · The paper itself

Abstract

The compound 3-amino-1,2,4-benzotriazine 1,4-dioxide (tirapazamine, TPZ) is a clinically promising anticancer agent that selectively kills the oxygen-poor (hypoxic) cells found in solid tumors. It has long been known that, under hypoxic conditions, TPZ causes DNA strand damage that is initiated by the abstraction of hydrogen atoms from the deoxyribose phosphate backbone of duplex DNA, but exact chemical mechanisms underlying this process remain unclear. Here we describe detailed characterization of sugar-derived products arising from TPZ-mediated strand damage. We find that the action of TPZ on duplex DNA under hypoxic conditions generates 5-methylene-2-furanone (6), oligonucleotide 3'-phosphoglycolates (7), malondialdehyde equivalents (8 or 9), and furfural (10). These results provide evidence that TPZ-mediated strand damage arises via hydrogen atom abstraction from both the most hindered (C1') and least hindered (C4' and C5') positions of the deoxyribose sugars in the double helix. The products observed are identical to those produced by hydroxyl radical. Additional experiments were conducted to better understand the chemical pathways by which TPZ generates the observed DNA-damage products. Consistent with previous work showing that TPZ can substitute for molecular oxygen in DNA damage reactions, it is found that, under anaerobic conditions, reaction of TPZ with a discrete, photogenerated C1'-radical in a DNA 2'-oligodeoxynucleotide cleanly generates the 2-deoxyribonolactone lesion (5) that serves as the precursor to 5-methylene-2-furanone (6). Overall, the results provide insight regarding the chemical structure of the DNA lesions that confront cellular repair, transcription, and replication machinery following exposure to TPZ and offer new information relevant to the chemical mechanisms underlying TPZ-mediated strand cleavage.

Indexed as

DNA DamageAntineoplastic AgentsChromatography, High Pressure LiquidCytotoxinsFuraldehydeHydrogenHydroxyl RadicalMalondialdehydeModels, ChemicalNeoplasmsOligonucleotidesSugar AcidsTime FactorsTirapazamineTranscription, GeneticTriazines2,4,5-trihydroxypentanoic acid gamma-lactoneAntineoplastic AgentsCytotoxinsFuraldehydeHydrogenHydroxyl RadicalMalondialdehydeOligonucleotidesSugar AcidsTirapazamineTriazines

Identifiers

PMID17900117
PMCPMC2821206
OpenAlexW2016935627

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.