ArticleJournal of biomolecular NMR2007
CheckShift: automatic correction of inconsistent chemical shift referencing.
Article in Journal of biomolecular NMR, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
14 citing papers in PubMed.
- AutomaticJournal of biomolecular NMR · 2018Article
- Conformationally selective multidimensional chemical shift ranges in proteins from a PACSY database purged using intrinsic quality criteria.Journal of biomolecular NMR · 2016Article
- An overview of tools for the validation of protein NMR structures.Journal of biomolecular NMR · 2014Review
- Recommendations of the wwPDB NMR Validation Task Force.Structure (London, England : 1993) · 2013Article
- NightShift: NMR shift inference by general hybrid model training--a framework for NMR chemical shift prediction.BMC bioinformatics · 2013Article
- Peakmatch: a simple and robust method for peak list matching.Journal of biomolecular NMR · 2013Article
- Functional binding of hexanucleotides to 3C protease of hepatitis A virus.Nucleic acids research · 2012Article
- A procedure to validate and correct the 13C chemical shift calibration of RNA datasets.Journal of biomolecular NMR · 2012Article
- Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein.Journal of molecular biology · 2011Article
- Article
- A probabilistic approach for validating protein NMR chemical shift assignments.Journal of biomolecular NMR · 2010Article
- CheckShift improved: fast chemical shift reference correction with high accuracy.Journal of biomolecular NMR · 2009Article
- Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing.Journal of biomolecular NMR · 2009Article
- SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database.Journal of biomolecular NMR · 2009Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The construction of a consistent protein chemical shift database is an important step toward making more extensive use of this data in structural studies. Unfortunately, progress in this direction has been hampered by the quality of the available data, particularly with respect to chemical shift referencing, which is often either inaccurate or inconsistently annotated. Preprocessing of the data is therefore required to detect and correct referencing errors. We have developed a program for performing this task, based on the comparison of reported and expected chemical shift distributions. This program, named CheckShift, does not require additional data and is therefore applicable to data sets where structures are not available. Therefore CheckShift provides the possibility to re-reference chemical shifts prior to their use as structural constraints.
Indexed as
Identifiers
17899394What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.