Evidence map›Paper›PMID 17899192›Full record

ArticleJournal of cancer research and clinical oncology2008

Identification and expression analysis of novel LAGE-1 alleles with single nucleotide polymorphisms in cancer patients.

Yi Shao, Zhen-Yuan Sun, Shi-Wei Sun, Yi Zhao, Wan Yee Sin, Yan-Hua Yuan, Andrew J Simpson, Lloyd J Old, Xin-Ting Sang, Yi-Lei Mao and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Yi ShaoDepartment of liver Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences, CAMS & PUMC, Beijing 100730, China.
Zhen-Yuan Sun
Shi-Wei Sun
Yi Zhao
Wan Yee Sin
Yan-Hua Yuan
Andrew J Simpson
Lloyd J Old
Xin-Ting Sang
Yi-Lei Mao
Yong Xie
Jie-Fu Huang
Hai-Tao Zhao
Chinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CNHong Kong University of Science and Technology · HKMemorial Sloan Kettering Cancer Center · USPeking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe purpose of this study is to identify single nucleotide polymorphisms (SNPs) in the coding region alleles of the X chromosomal LAGE-1 gene, and investigate the frequency of such SNPs in both cancer patients and healthy controls, and thus determine the potential significance of these SNPs with respect to cancer vaccine therapy.

methodsIn this study, different mRNAs transcribed from the LAGE-1 gene were identified by RT-PCR from healthy donors and cancer patients samples.

resultsA new LAGE-1 allele containing three coding region SNPs (69A/G, 317C/G, and 397T/G) were identified. The allele is highly expressed as the LAGE-1a mRNA variant AY679089 in some of the cancer patients. The three SNPs altered the LAGE-1 gene sequence to that of NYESO-1 at both the nucleotide and amino acid level.

conclusionThere is a high frequency of the LAGE-1 gene allele with SNPs in coding regions in cancer patients. There was a clear relationship between the variant AY679089 and gastric cancer. The SNPs may lead to accelerated progress of poorly differentiated gastric cancer. The SNPs found in these alleles may also alter the immunological characteristics of LAGE-1a and should be taken into account if this antigen is adopted as a cancer vaccine component.

Indexed as

Polymorphism, Single NucleotideAllelesAntigens, NeoplasmAntigens, SurfaceBase SequenceFemaleHumansMaleMolecular Sequence DataNeoplasmsStomach NeoplasmsAntigens, NeoplasmAntigens, SurfaceCTAG2 protein, human

Identifiers

PMID17899192
PMCPMC12161627
OpenAlexW2071975354

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.