Evidence map›Paper›PMID 17895969›Full record

ArticlePloS one2007

Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032.

Jason Gioia, Shailaja Yerrapragada, Xiang Qin, Huaiyang Jiang, Okezie C Igboeli, Donna Muzny, Shannon Dugan-Rocha, Yan Ding, Alicia Hawes, Wen Liu and 31 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 127 citations in OpenAlex.

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  15. Ballooning for Biologists: Mission Essentials for Flying Life Science Experiments to Near Space on NASA Large Scientific Balloons.Gravitational and space research : publication of the American Society for Gravitational and Space Research · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 8 institutions in 1 country.

Jason GioiaHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Shailaja Yerrapragada
Xiang Qin
Huaiyang Jiang
Okezie C Igboeli
Donna Muzny
Shannon Dugan-Rocha
Yan Ding
Alicia Hawes
Wen Liu
Lesette Perez
Christie Kovar
Huyen Dinh
Sandra Lee
Lynne Nazareth
Peter Blyth
Michael Holder
Christian Buhay
Madhan R Tirumalai
Yamei Liu
Indrani Dasgupta
Lina Bokhetache
Masaya Fujita
Fathi Karouia
Prahathees Eswara Moorthy
Johnathan Siefert
Akif Uzman
Prince Buzumbo
Avani Verma
Hiba Zwiya
Brian D McWilliams
Adeloa Olowu
Kenneth D Clinkenbeard
David Newcombe
Lisa Golebiewski
Joseph F Petrosino
Wayne L Nicholson
George E Fox
Kasthuri Venkateswaran
Sarah K Highlander
George M Weinstock
Baylor College of Medicine · USUniversity of Houston · USBaylor Genetics · USUniversity of Houston - Downtown · USJet Propulsion Laboratory · USOklahoma State University · USUniversity of Florida · USUniversity of St. Thomas - Texas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBacillus spores are notoriously resistant to unfavorable conditions such as UV radiation, gamma-radiation, H2O2, desiccation, chemical disinfection, or starvation. Bacillus pumilus SAFR-032 survives standard decontamination procedures of the Jet Propulsion Lab spacecraft assembly facility, and both spores and vegetative cells of this strain exhibit elevated resistance to UV radiation and H2O2 compared to other Bacillus species. PRINCIPAL

findingsThe genome of B. pumilus SAFR-032 was sequenced and annotated. Lists of genes relevant to DNA repair and the oxidative stress response were generated and compared to B. subtilis and B. licheniformis. Differences in conservation of genes, gene order, and protein sequences are highlighted because they potentially explain the extreme resistance phenotype of B. pumilus. The B. pumilus genome includes genes not found in B. subtilis or B. licheniformis and conserved genes with sequence divergence, but paradoxically lacks several genes that function in UV or H2O2 resistance in other Bacillus species. SIGNIFICANCE: This study identifies several candidate genes for further research into UV and H2O2 resistance. These findings will help explain the resistance of B. pumilus and are applicable to understanding sterilization survival strategies of microbes.

Indexed as

DNA RepairBacillusDrug Resistance, BacterialGamma RaysGenes, BacterialGenome, BacterialHydrogen PeroxideOxidative StressSequence Analysis, DNASpores, BacterialUltraviolet RaysHydrogen Peroxide

Identifiers

PMID17895969
PMCPMC1976550
OpenAlexW2094803867

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.