Evidence map›Paper›PMID 17895424›Full record

ArticleGenome research2007

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21.

Robert Lyle, Paola Prandini, Kazutoyo Osoegawa, Boudewijn ten Hallers, Sean Humphray, Baoli Zhu, Eduardo Eyras, Robert Castelo, Christine P Bird, Sarantos Gagos and 16 more

Abstract read
In one paragraph

Article in Genome research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Churros: a Docker-based pipeline for large-scale epigenomic analysis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
    Article
  2. The complete sequence of a human genome.Science (New York, N.Y.) · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016
    Article
  10. Narrowing the localization of the region breakpoint in most frequent Robertsonian translocations.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Human centromere genomics: now it's personal.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Robert LyleDepartment of Genetic Medicine and Development, University of Geneva Medical School, and University Hospitals, 1211 Geneva, Switzerland. Robert.Lyle@medisin.uio.no
Paola Prandini
Kazutoyo Osoegawa
Boudewijn ten Hallers
Sean Humphray
Baoli Zhu
Eduardo Eyras
Robert Castelo
Christine P Bird
Sarantos Gagos
Carol Scott
Antony Cox
Samuel Deutsch
Catherine Ucla
Marc Cruts
Sophie Dahoun
Xinwei She
Frederique Bena
Sheng-Yue Wang
Christine Van Broeckhoven
Evan E Eichler
Roderic Guigo
Jane Rogers
Pieter J de Jong
Alexandre Reymond
Stylianos E Antonarakis

Funding

Sequence and Assembly of Segmental DuplicationsR01HG002385 · NHGRI · UNIVERSITY OF WASHINGTON · PI Evan Eichler · 2001 to 2026
$13.3M
NHGRI NIH HHS HG002385NHGRI NIH HHS R01 HG002385
6 · The paper itself

Abstract

The goals of the human genome project did not include sequencing of the heterochromatic regions. We describe here an initial sequence of 1.1 Mb of the short arm of human chromosome 21 (HSA21p), estimated to be 10% of 21p. This region contains extensive euchromatic-like sequence and includes on average one transcript every 100 kb. These transcripts show multiple inter- and intrachromosomal copies, and extensive copy number and sequence variability. The sequencing of the "heterochromatic" regions of the human genome is likely to reveal many additional functional elements and provide important evolutionary information.

Indexed as

Chromosomes, Human, Pair 21Polymorphism, GeneticContig MappingEuchromatinGenome, HumanHumansIn Situ Hybridization, FluorescenceEuchromatin

Identifiers

PMID17895424
PMCPMC2045151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.