Evidence map›Paper›PMID 17895378›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Atomic-level structural and functional model of a bacterial photosynthetic membrane vesicle.

Melih K Sener, John D Olsen, C Neil Hunter, Klaus Schulten

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 181 citations in OpenAlex.

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  14. Large-Scale Molecular Dynamics Simulations of Cellular Compartments.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
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  20. Highly oriented photosynthetic reaction centers generate a proton gradient in synthetic protocells.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Melih K SenerBeckman Institute and Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. melih@ks.uiuc.edu
John D Olsen
C Neil Hunter
Klaus Schulten
University of Sheffield · GBCornell University · USUniversity of Illinois Urbana-Champaign · US

Funding

WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI LUTHEY-SCHULTEN, ZAIDA · 1990 to 2011
$19.8M
NCRR NIH HHS 2 P41 RR05969NCRR NIH HHS P41 RR005969
6 · The paper itself

Abstract

The photosynthetic unit (PSU) of purple photosynthetic bacteria consists of a network of bacteriochlorophyll-protein complexes that absorb solar energy for eventual conversion to ATP. Because of its remarkable simplicity, the PSU can serve as a prototype for studies of cellular organelles. In the purple bacterium Rhodobacter sphaeroides the PSU forms spherical invaginations of the inner membrane, approximately 70 nm in diameter, composed mostly of light-harvesting complexes, LH1 and LH2, and reaction centers (RCs). Atomic force microscopy studies of the intracytoplasmic membrane have revealed the overall spatial organization of the PSU. In the present study these atomic force microscopy data were used to construct three-dimensional models of an entire membrane vesicle at the atomic level by using the known structure of the LH2 complex and a structural model of the dimeric RC-LH1 complex. Two models depict vesicles consisting of 9 or 18 dimeric RC-LH1 complexes and 144 or 101 LH2 complexes, representing a total of 3,879 or 4,464 bacteriochlorophylls, respectively. The in silico reconstructions permit a detailed description of light absorption and electronic excitation migration, including computation of a 50-ps excitation lifetime and a 95% quantum efficiency for one of the model membranes, and demonstration of excitation sharing within the closely packed RC-LH1 dimer arrays.

Indexed as

PhotosynthesisAdenosine TriphosphateBacterial ChromatophoresBacterial ProteinsCell MembraneDimerizationElectron TransportElectron Transport Complex IIIMembrane ProteinsMicroscopy, Atomic ForceModels, MolecularProtein ConformationRhodobacter sphaeroidesAdenosine TriphosphateBacterial ProteinsElectron Transport Complex IIIMembrane Proteins

Identifiers

PMID17895378
PMCPMC2000399
OpenAlexW2017307287

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.