Evidence map›Paper›PMID 17892854›Full record

ArticleImmunity2007

Zebrafish peptidoglycan recognition proteins are bactericidal amidases essential for defense against bacterial infections.

Xinna Li, Shiyong Wang, Jin Qi, Stephen F Echtenkamp, Rohini Chatterjee, Mu Wang, Geert-Jan Boons, Roman Dziarski, Dipika Gupta

Open access · bronzeAbstract read
In one paragraph

Article in Immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 144 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xinna LiIndiana University School of Medicine Northwest, Gary, IN 46408, USA.
Shiyong Wang
Jin Qi
Stephen F Echtenkamp
Rohini Chatterjee
Mu Wang
Geert-Jan Boons
Roman Dziarski
Dipika Gupta
Indiana University School of MedicineUniversity of Georgia · US

Funding

Synthetic Oligosaccharides for Probing Infection and Innate ImmunityR01GM061761 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI BOONS, GEERT-JAN · 2000 to 2014
$4.5M
MECHANISM OF PATHOGENIC ACTIVITY OF PEPTIDOGLYCANR01AI028797 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DZIARSKI, ROMAN · 1992 to 2012
$4.0M
New synthetic methods for the preparation of carbohydrate-based vaccinesR01GM065248 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI BOONS, GEERT-JAN · 2004 to 2011
$3.0M
Antibacterial peptidoglycan recognition proteinsU01AI056395 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI DZIARSKI, ROMAN · 2003 to 2007
$1.7M
NIAID NIH HHS AI28797NIAID NIH HHS AI56395NIAID NIH HHS R01 AI028797NIAID NIH HHS U01 AI056395NIGMS NIH HHS GM065248NIGMS NIH HHS R01 GM061761NIGMS NIH HHS R01 GM065248
6 · The paper itself

Abstract

Peptidoglycan recognition proteins (PGRPs) are structurally conserved through evolution, but their functions in innate immunity are different in invertebrates and vertebrates. We asked what the functions of PGRPs in fish are and whether they are indispensable for defense against infection because fish are the first vertebrates that developed adaptive immunity, but they still rely solely on innate immunity during early development of embryos. We identified and cloned three zebrafish PGRPs and showed that they are highly expressed in eggs, developing embryos, and adult tissues that contact external environment. Zebrafish PGRPs have both peptidoglycan-lytic amidase activity and broad-spectrum bactericidal activity, which is a unique feature. Furthermore, we demonstrated that in the developing zebrafish embryo, one of these PGRPs is essential for defense and survival during bacterial infections. These data demonstrate an absolute requirement for innate immunity in defense against infections in fish embryos and for a PGRP protein for survival in vertebrates.

Indexed as

AmidohydrolasesAmino Acid SequenceAnimalsBacterial InfectionsBlotting, NorthernBlotting, WesternCarrier ProteinsCloning, MolecularEmbryo, NonmammalianHumansImmunohistochemistryIn Situ HybridizationMolecular Sequence DataSequence Homology, Amino AcidZebrafishAmidohydrolasesCarrier Proteinspeptidoglycan recognition protein

Identifiers

PMID17892854
PMCPMC2074879
OpenAlexW2081336917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.