Evidence map›Paper›PMID 17892535›Full record

ArticleTraffic (Copenhagen, Denmark)2007

Structural features of vps35p involved in interaction with other subunits of the retromer complex.

Ricardo Restrepo, Xiang Zhao, Harald Peter, Bao-Yan Zhang, Peter Arvan, Steven F Nothwehr

Open access · bronzeAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. VPS35 and retromer dysfunction in Parkinson's disease.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  2. Receptor Recycling by Retromer.Molecular and cellular biology · 2023
    Review
  3. Review
  4. Article
  5. Biogenesis of endosome-derived transport carriers.Cellular and molecular life sciences : CMLS · 2015
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Retromer.Current opinion in cell biology · 2008
    Review
  14. Retrograde traffic in the biosynthetic-secretory route.Histochemistry and cell biology · 2008
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Ricardo RestrepoDivision of Biological Sciences, 401 Tucker Hall, University of Missouri, Columbia, MO 65211, USA.
Xiang ZhaoDivision of Metabolism, Endocrinology & Diabetes, University of Michigan, 5560 MSRB2, 1150 W. Medical Center Drive, Ann Arbor, MI 48109, USA.
Harald PeterInstitute of Technical Biochemistry, University of Stuttgart, Allmandring 31, D-70569 Stuttgart, Germany.
Bao-Yan ZhangDivision of Metabolism, Endocrinology & Diabetes, University of Michigan, 5560 MSRB2, 1150 W. Medical Center Drive, Ann Arbor, MI 48109, USA.
Peter ArvanDivision of Metabolism, Endocrinology & Diabetes, University of Michigan, 5560 MSRB2, 1150 W. Medical Center Drive, Ann Arbor, MI 48109, USA.
Steven F NothwehrDivision of Biological Sciences, 401 Tucker Hall, University of Missouri, Columbia, MO 65211, USA.
University of Michigan–Ann Arbor · USUniversity of Missouri · USUniversity of Stuttgart · DE

Funding

Proinsulin Trafficking for Insulin BiosynthesisR01DK048280 · NIDDK · YESHIVA UNIVERSITY · PI ARVAN, PETER · 1994 to 2024
$10.5M
ANALYSIS OF GOLGI MEMBRANE PROTEIN LOCALIZATION IN YEASTR01GM053449 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI NOTHWEHR, STEVEN F · 2000 to 2003
$749k
NIDDK NIH HHS DK48280NIDDK NIH HHS R01 DK048280NIGMS NIH HHS R01 GM053449NIGMS NIH HHS R01GM053449
6 · The paper itself

Abstract

The penta-subunit retromer complex of yeast mediates selective retrieval of membrane proteins from the prevacuolar endosome to the trans Golgi network. In this study, we set out to generate a panel of vps35 dominant-negative mutants that disrupt retromer-mediated cargo sorting. Mapping of the mutations revealed two types of alterations leading to dominant-negative behavior of the 944-amino acid protein: (i) mutations at or near the R(98) residue or (ii) C-terminal truncations exemplified by a nonsense mutation at codon 733. Both could be suppressed by overexpression of wild-type Vps35p, suggesting that these dominant-negative mutants compete for interactions with other retromer subunits. Interestingly, Vps35-R(98)W expression destabilized Vps26p while having no effect on Vps29p stability, while Vps35-Q(733)* expression affected Vps29p stability but had no effect on Vps26p. Measurement of Vps35/Vps26 and Vps35/Vps29 pairwise associations by coimmunoprecipitation in the presence or absence of other retromer subunits indicated that the R(98) residue, which is part of a conserved PRLYL motif, is critical for Vps35p binding to Vps26p, while both R(98) and residues 733-944 are needed for efficient binding to Vps29p.

Indexed as

AllelesAmino Acid SequenceCarrier ProteinsCodonEndosomesGenes, DominantMembrane ProteinsMolecular Sequence DataMutationProtein BindingProtein Structure, TertiaryProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino Acidtrans-Golgi NetworkCarrier ProteinsCodonMembrane ProteinsPEP8 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsVPS29 protein, S cerevisiaeVPS35 protein, S cerevisiae

Identifiers

PMID17892535
PMCPMC2504507
OpenAlexW2107752227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.