Evidence map›Paper›PMID 17892323›Full record

ArticlePLoS pathogens2007

T cells contain an RNase-insensitive inhibitor of APOBEC3G deaminase activity.

Beth K Thielen, Kevin C Klein, Lorne W Walker, Mary Rieck, Jane H Buckner, Garrett W Tomblingson, Jaisri R Lingappa

Open access · goldAbstract readComparative Study
In one paragraph

Article in PLoS pathogens, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. The current toolbox for APOBEC drug discovery.Trends in pharmacological sciences · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Beth K ThielenDepartment of Pathobiology, University of Washington, Seattle, Washington, USA.
Kevin C Klein
Lorne W Walker
Mary Rieck
Jane H Buckner
Garrett W Tomblingson
Jaisri R Lingappa
University of Washington · USBenaroya Research Institute

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
VENEREAL DISEASET32AI007140 · NIAID · UNIVERSITY OF WASHINGTON · PI Julia Cook Dombrowski · 1985 to 2026
$19.4M
The role of cellular factors in the HIV-1 capsid assembly pathwayR01AI048389 · NIAID · UNIVERSITY OF WASHINGTON · PI LINGAPPA, JAISRI R · 2002 to 2011
$3.4M
Regulation of APOBEC3G enzymatic activity in HIV-infected primary human T cellsR01AI078781 · NIAID · UNIVERSITY OF WASHINGTON · PI LINGAPPA, JAISRI R · 2009 to 2012
$1.8M
NIAID NIH HHS R01 AI048389NIAID NIH HHS T32 AI007140NIGMS NIH HHS 5 T32 GM07266NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

The deoxycytidine deaminase APOBEC3G (A3G) is expressed in human T cells and inhibits HIV-1 replication. When transfected into A3G-deficient epithelial cell lines, A3G induces catastrophic hypermutation by deaminating the HIV-1 genome. Interestingly, studies suggest that endogenous A3G in T cells induces less hypermutation than would be expected. However, to date, the specific deaminase activity of endogenous A3G in human CD4+ T cells has not been examined directly. Here, we compared deaminase activity of endogenous and exogenous A3G in various human cell lines using a standard assay and a novel, quantitative, high-throughput assay. Exogenous A3G in epithelial cell lysates displayed deaminase activity only following RNase treatment, as expected given that A3G is known to form an enzymatically inactive RNA-containing complex. Surprisingly, comparable amounts of endogenous A3G from T cell lines or from resting or activated primary CD4+ T cells exhibited minimal deaminase activity, despite RNase treatment. Specific deaminase activity of endogenous A3G in H9, CEM, and other T cell lines was up to 36-fold lower than specific activity of exogenous A3G in epithelial-derived cell lines. Furthermore, RNase-treated T cell lysates conferred a dose-dependent inhibition to epithelial cell lysates expressing enzymatically active A3G. These studies suggest that T cells, unlike epithelial-derived cell lines, express an unidentified RNase-resistant factor that inhibits A3G deaminase activity. This factor could be responsible for reduced levels of hypermutation in T cells, and its identification and blockade could offer a means for increasing antiretroviral intrinsic immunity of T cells.

Indexed as

APOBEC-3G DeaminaseCD4-Positive T-LymphocytesCell LineCytidine DeaminaseGene Expression Regulation, EnzymologicHumansRibonucleasesTransfectionAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine DeaminaseRibonucleases

Identifiers

PMID17892323
PMCPMC1993843
OpenAlexW1970398080

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.