Evidence map›Paper›PMID 17890329›Full record

ArticleApplied and environmental microbiology2007

Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula.

M P Dempsey, M Dobson, C Zhang, M Zhang, C Lion, C B Gutiérrez-Martín, P C Iwen, P D Fey, M E Olson, D Niemeyer and 11 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Genotyping ofMicroorganisms · 2020
    Article
  3. Phylogeographic Distribution of Human and HareFrontiers in cellular and infection microbiology · 2019
    Article
  4. Frontiers in cellular and infection microbiology · 2017
    Review
  5. Long-range dispersal movedMicrobial genomics · 2016
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Evidence of circulation of an epidemic strain of Francisella tularensis in France by multispacer typing.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2011
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

M P DempseyDivision of Microbiology, Armed Forces Institute of Pathology, Washington, DC, USA.
M Dobson
C Zhang
M Zhang
C Lion
C B Gutiérrez-Martín
P C Iwen
P D Fey
M E Olson
D Niemeyer
S Francesconi
R Crawford
M Stanley
J Rhodes
D M Wagner
A J Vogler
D Birdsell
P Keim
A Johansson
S H Hinrichs
A K Benson

Funding

Genome biology of Francisella tularensis populationsR21AI057755 · NIAID · UNIVERSITY OF NEBRASKA LINCOLN · PI BENSON, ANDREW K · 2004 to 2005
$391k
NIAID NIH HHS 1R21AI057755-01NIAID NIH HHS R21 AI057755
6 · The paper itself

Abstract

Francisella tularensis subsp. holarctica is widely disseminated in North America and the boreal and temperate regions of the Eurasian continent. Comparative genomic analyses identified a 1.59-kb genomic deletion specific to F. tularensis subsp. holarctica isolates from Spain and France. Phylogenetic analysis of strains carrying this deletion by multiple-locus variable-number tandem repeat analysis showed that the strains comprise a highly related set of genotypes, implying that these strains were recently introduced or recently emerged by clonal expansion in France and the Iberian Peninsula.

Indexed as

Gene DeletionGenome, BacterialCluster AnalysisDNA, BacterialElectrophoresis, Agar GelFranceFrancisellaFrancisella tularensisGenes, BacterialPolymerase Chain ReactionSpainSpecies SpecificityDNA, Bacterial

Identifiers

PMID17890329
PMCPMC2168206

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.