Evidence map›Paper›PMID 17888947›Full record

ArticleJournal of molecular biology2007

Structural characterization of zinc-deficient human superoxide dismutase and implications for ALS.

Blaine R Roberts, John A Tainer, Elizabeth D Getzoff, Dean A Malencik, Sonia R Anderson, Valerie C Bomben, Kathrin R Meyers, P Andrew Karplus, Joseph S Beckman

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 150 citations in OpenAlex.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Blaine R RobertsDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.
John A Tainer
Elizabeth D Getzoff
Dean A Malencik
Sonia R Anderson
Valerie C Bomben
Kathrin R Meyers
P Andrew Karplus
Joseph S Beckman
Oregon State University · USScripps Research Institute · US

Funding

Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
Overall Program/FreiP01AT002034 · NCCIH · OREGON STATE UNIVERSITY · PI HAGEN, TORY M · 2003 to 2012
$11.7M
TOXICOLOGY OF ENVIRONMENTAL HALOCARBONSP01ES000040 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2007
$8.0M
STRUCTURAL ANALYSIS OF CHROMATICALLY ACTIVE PROTEINSR01GM037684 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GETZOFF, ELIZABETH D · 1987 to 2009
$3.1M
SUPEROXIDE DISMUTASE STRUCTURES AND LOU GEHRIGS DISEASER01GM039345 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI GETZOFF, ELIZABETH D, TAINER, JOHN A. · 1988 to 2013
$1.9M
Superoxide Dismutase, Peroxynitrite and ALSR01NS058628 · NINDS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 2008 to 2012
$1.6M
NCCIH NIH HHS AT002034-02NCCIH NIH HHS P01 AT002034NIEHS NIH HHS ES00040NIEHS NIH HHS P01 ES000040NIEHS NIH HHS P30 ES000210NIEHS NIH HHS P30 ES00210NIGMS NIH HHS GM37684NIGMS NIH HHS GM39345NIGMS NIH HHS R01 GM037684NIGMS NIH HHS R01 GM039345NINDS NIH HHS R01 NS058628
6 · The paper itself

Abstract

Over 130 mutations to copper, zinc superoxide dismutase (SOD) are implicated in the selective death of motor neurons found in 25% of patients with familial amyotrophic lateral sclerosis (ALS). Despite their widespread distribution, ALS mutations appear positioned to cause structural and misfolding defects. Such defects decrease SOD's affinity for zinc, and loss of zinc from SOD is sufficient to induce apoptosis in motor neurons in vitro. To examine the importance of the zinc site in the structure and pathogenesis of human SOD, we determined the 2.0-A-resolution crystal structure of a designed zinc-deficient human SOD, in which two zinc-binding ligands have been mutated to hydrogen-bonding serine residues. This structure revealed a 9 degrees twist of the subunits, which opens the SOD dimer interface and represents the largest intersubunit rotational shift observed for a human SOD variant. Furthermore, the electrostatic loop and zinc-binding subloop were partly disordered, the catalytically important Arg143 was rotated away from the active site, and the normally rigid intramolecular Cys57-Cys146 disulfide bridge assumed two conformations. Together, these changes allow small molecules greater access to the catalytic copper, consistent with the observed increased redox activity of zinc-deficient SOD. Moreover, the dimer interface is weakened and the Cys57-Cys146 disulfide is more labile, as demonstrated by the increased aggregation of zinc-deficient SOD in the presence of a thiol reductant. However, equimolar Cu,Zn SOD rapidly forms heterodimers with zinc-deficient SOD (t1/2 approximately 15 min) and prevents aggregation. The stabilization of zinc-deficient SOD as a heterodimer with Cu,Zn SOD may contribute to the dominant inheritance of ALS mutations. These results have general implications for the importance of framework stability on normal metalloenzyme function and specific implications for the role of zinc ion in the fatal neuropathology associated with SOD mutations.

Indexed as

Amyotrophic Lateral SclerosisBinding SitesCopperCrystallography, X-RayDimerizationFluorescence Resonance Energy TransferHumansModels, BiologicalModels, MolecularMutationProtein BindingProtein Structure, SecondaryProtein Structure, TertiarySuperoxide DismutaseZincCopperSuperoxide DismutaseZinc

Identifiers

PMID17888947
PMCPMC2175016
OpenAlexW1994245840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.