Evidence map›Paper›PMID 17885136›Full record

ArticleScience (New York, N.Y.)2007

Draft genome of the filarial nematode parasite Brugia malayi.

Elodie Ghedin, Shiliang Wang, David Spiro, Elisabet Caler, Qi Zhao, Jonathan Crabtree, Jonathan E Allen, Arthur L Delcher, David B Guiliano, Diego Miranda-Saavedra and 61 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Science (New York, N.Y.), 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 336 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
336citing papers in PubMed, 1 pooled it
78.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

336 citing papers in PubMed, 1 synthesis or guideline pooled it, 623 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Chromosome-contiguous nuclear genome ofOne health (Amsterdam, Netherlands) · 2025
    Article
  6. Article
  7. Article
  8. Current research in parasitology & vector-borne diseases · 2025
    Article
  9. Inference of essential genes inComputational and structural biotechnology journal · 2024
    Article
  10. Article
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Insects · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article

276 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

71 authors at 3 institutions in 3 countries.

Elodie GhedinDivision of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, PA 15261, USA. GhedinE@dom.pitt.edu
Shiliang Wang
David Spiro
Elisabet Caler
Qi Zhao
Jonathan Crabtree
Jonathan E Allen
Arthur L Delcher
David B Guiliano
Diego Miranda-Saavedra
Samuel V Angiuoli
Todd Creasy
Paolo Amedeo
Brian Haas
Najib M El-Sayed
Jennifer R Wortman
Tamara Feldblyum
Luke Tallon
Michael Schatz
Martin Shumway
Hean Koo
Steven L Salzberg
Seth Schobel
Mihaela Pertea
Mihai Pop
Owen White
Geoffrey J Barton
Clotilde K S Carlow
Michael J Crawford
Jennifer Daub
Matthew W Dimmic
Chris F Estes
Jeremy M Foster
Mehul Ganatra
William F Gregory
Nicholas M Johnson
Jinming Jin
Richard Komuniecki
Ian Korf
Sanjay Kumar
Sandra Laney
Ben-Wen Li
Wen Li
Tim H Lindblom
Sara Lustigman
Dong Ma
Claude V Maina
David M A Martin
James P McCarter
Larry McReynolds
Makedonka Mitreva
Thomas B Nutman
John Parkinson
José M Peregrín-Alvarez
Catherine Poole
Qinghu Ren
Lori Saunders
Ann E Sluder
Katherine Smith
Mario Stanke
Thomas R Unnasch
Jenna Ware
Aguan D Wei
Gary Weil
Deryck J Williams
Yinhua Zhang
Steven A Williams
Claire Fraser-Liggett
Barton Slatko
Mark L Blaxter
Alan L Scott
University of Pittsburgh · USUniversity of Dundee · GBAustralian National University · AU

Funding

COMPUTATIONAL MODELING OF GENES AND GENE STRUCTURER01LM006845 · NLM · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 1999 to 2010
$5.9M
SEQUENCING 12 MB OF THE SCHISTOSOMA MANSONI GENOMEU01AI048828 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI EL-SAYED, NAJIB M. · 2001 to 2002
$4.9M
Brugia Malayi Genome ProjectU01AI050903 · NIAID · INSTITUTE FOR GENOMIC RESEARCH · PI GHEDIN, ELODIE · 2001 to 2002
$4.1M
Transfection and analysis of transcription in B. malayiR01AI048562 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI UNNASCH, THOMAS R · 2001 to 2009
$2.7M
Bioinformatics Software for Analyzing Microbial GenomesR01LM007938 · NLM · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 2003 to 2006
$757k
Nuclear Receptor Regulation of Detoxification NetworksR15ES013128 · NIEHS · LYON COLLEGE · PI LINDBLOM, TIM H · 2004 to 2010
$377k
Molecular ID Of Filarial/Nonfilarial Genes/ProteinsZ01AI000512 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI NUTMAN, THOMAS B · 1988 to 2008
$324k
NIAID NIH HHS R01 AI048562NIAID NIH HHS U01 AI048828NIAID NIH HHS U01-AI50903NIEHS NIH HHS R15 ES013128NLM NIH HHS R01 LM006845NLM NIH HHS R01 LM007938
6 · The paper itself

Abstract

Parasitic nematodes that cause elephantiasis and river blindness threaten hundreds of millions of people in the developing world. We have sequenced the approximately 90 megabase (Mb) genome of the human filarial parasite Brugia malayi and predict approximately 11,500 protein coding genes in 71 Mb of robustly assembled sequence. Comparative analysis with the free-living, model nematode Caenorhabditis elegans revealed that, despite these genes having maintained little conservation of local synteny during approximately 350 million years of evolution, they largely remain in linkage on chromosomal units. More than 100 conserved operons were identified. Analysis of the predicted proteome provides evidence for adaptations of B. malayi to niches in its human and vector hosts and insights into the molecular basis of a mutualistic relationship with its Wolbachia endosymbiont. These findings offer a foundation for rational drug design.

Indexed as

Genome, HelminthAnimalsBrugia malayiCaenorhabditisDrosophila melanogasterDrug ResistanceFilariasisHumansMolecular Sequence Data

Identifiers

PMID17885136
PMCPMC2613796
OpenAlexW2144008452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.