Evidence map›Paper›PMID 17884090›Full record

ArticleJournal of molecular biology2007

A pi-helix switch selective for porphyrin deprotonation and product release in human ferrochelatase.

Amy E Medlock, Tamara A Dailey, Teresa A Ross, Harry A Dailey, William N Lanzilotta

Abstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. New Avenues of Heme Synthesis Regulation.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Review
  10. Biosynthesis and trafficking of hemeCritical reviews in biochemistry and molecular biology · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. Heme biosynthesis and the porphyrias.Molecular genetics and metabolism · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Amy E MedlockBiomedical and Health Sciences Institute, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.
Tamara A Dailey
Teresa A Ross
Harry A Dailey
William N Lanzilotta

Funding

TERMINAL HEME SYNTHETIC ENZYMESR01DK032303 · NIDDK · UNIVERSITY OF GEORGIA (UGA) · PI DAILEY, HARRY A · 1986 to 2010
$2.4M
Terminal steps in Heme BiosynthesisR56DK032303 · NIDDK · UNIVERSITY OF GEORGIA · PI DAILEY, HARRY A · 2010 to 2010
$175k
NIDDK NIH HHS DK32303NIDDK NIH HHS R01 DK032303NIDDK NIH HHS R56 DK032303
6 · The paper itself

Abstract

Ferrochelatase (protoheme ferrolyase, EC 4.99.1.1) is the terminal enzyme in heme biosynthesis and catalyzes the insertion of ferrous iron into protoporphyrin IX to form protoheme IX (heme). Due to the many critical roles of heme, synthesis of heme is required by the vast majority of organisms. Despite significant investigation of both the microbial and eukaryotic enzyme, details of metal chelation remain unidentified. Here we present the first structure of the wild-type human enzyme, a lead-inhibited intermediate of the wild-type enzyme with bound metallated porphyrin macrocycle, the product bound form of the enzyme, and a higher resolution model for the substrate-bound form of the E343K variant. These data paint a picture of an enzyme that undergoes significant changes in secondary structure during the catalytic cycle. The role that these structural alterations play in overall catalysis and potential protein-protein interactions with other proteins, as well as the possible molecular basis for these changes, is discussed. The atomic details and structural rearrangements presented herein significantly advance our understanding of the substrate binding mode of ferrochelatase and reveal new conformational changes in a structurally conserved pi-helix that is predicted to have a central role in product release.

Indexed as

Binding SitesCatalysisCrystallography, X-RayFerrochelataseHemeHumansModels, BiologicalModels, MolecularMutationProtein Structure, SecondaryProtein Structure, TertiaryProtoporphyrinsFerrochelataseHemeprotoporphyrin IXProtoporphyrins

Identifiers

PMID17884090
PMCPMC2083577

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.