ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2007
Identification, validation and survey of a single nucleotide polymorphism (SNP) associated with pungency in Capsicum spp.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- An Analysis of Capsaicin, Dihydrocapsaicin, Vitamin C and Flavones in Different Tissues during the Development of Ornamental Pepper.Plants (Basel, Switzerland) · 2024Article
- Development and Validation of Kompetitive Allele-Specific PCR Assays for Erucic Acid Content in Indian Mustard [Frontiers in plant science · 2021Article
- Genotyping by Sequencing-Based Discovery of SNP Markers and Construction of Linkage Map from FBioMed research international · 2021Article
- Article
- Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.PloS one · 2019Article
- PCR-based genotyping of SNP markers in sheep.Molecular biology reports · 2018Article
- Next-Generation Sequencing Approaches in Genome-Wide Discovery of Single Nucleotide Polymorphism Markers Associated with Pungency and Disease Resistance in Pepper.BioMed research international · 2018Review
- A new method based on SNP of nrDNA-ITS to identify Saccharum spontaneum and its progeny in the genus Saccharum.PloS one · 2018Article
- Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae).Annals of botany · 2016Article
- Association analysis of genes involved in maize (Zea mays L.) root development with seedling and agronomic traits under contrasting nitrogen levels.Plant molecular biology · 2015Article
- Characterization of Sugarcane Mosaic Virus Scmv1 and Scmv2 Resistance Regions by Regional Association Analysis in Maize.PloS one · 2015Article
- Guidelines for the tetra-primer ARMS-PCR technique development.Molecular biotechnology · 2014Article
- A study of the role of gene TaMYB2 and an associated SNP in dehydration tolerance in common wheat.Molecular biology reports · 2012Article
- Association of an SNP in a novel DREB2-like gene SiDREB2 with stress tolerance in foxtail millet [Setaria italica (L.)].Journal of experimental botany · 2011Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A single nucleotide polymorphism (SNP) associated with pungency was detected within an expressed sequence tag (EST) of 307 bp. This fragment was identified after expression analysis of the EST clone SB2-66 in placenta tissue of Capsicum fruits. Sequence alignments corresponding to this new fragment allowed us to identify an SNP between pungent and non-pungent accessions. Two methods were chosen for the development of the SNP marker linked to pungency: tetra-primer amplification refractory mutation system-PCR (tetra-primer ARMS-PCR) and cleaved amplified polymorphic sequence. Results showed that both methods were successful in distinguishing genotypes. Nevertheless, tetra-primer ARMS-PCR was chosen for SNP genotyping because it was more rapid, reliable and less cost-effective. The utility of this SNP marker for pungency was demonstrated by the ability to distinguish between 29 pungent and non-pungent cultivars of Capsicum annuum. In addition, the SNP was also associated with phenotypic pungent character in the tested genotypes of C. chinense, C. baccatum, C. frutescens, C. galapagoense, C. eximium, C. tovarii and C. cardenasi. This SNP marker is a faster, cheaper and more reproducible method for identifying pungent peppers than other techniques such as panel tasting, and allows rapid screening of the trait in early growth stages.
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