Evidence map›Paper›PMID 17881636›Full record

ArticleBlood2007

Histone acetylation at the human beta-globin locus changes with developmental age.

Wenxuan Yin, Gráinne Barkess, Xiangdong Fang, Ping Xiang, Hua Cao, George Stamatoyannopoulos, Qiliang Li

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Exploring epigenetic and microRNA approaches for γ-globin gene regulation.Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
  6. Fetal haemoglobin induction in sickle cell disease.British journal of haematology · 2018
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Wenxuan YinDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, 98195, USA.
Gráinne Barkess
Xiangdong Fang
Ping Xiang
Hua Cao
George Stamatoyannopoulos
Qiliang Li
University of Washington · USUniversity of Washington Medical Center · US

Funding

MOLECULAR CONTROL OF GLOBIN GENE SWITCHINGR37DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1998 to 2006
$3.8M
Molecular Mechanism of Human g-Globin Gene SilencingR01HL073439 · NHLBI · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2003 to 2011
$2.8M
MOLECULAR CONTROL OF HUMAN GLOBIN GENE SWITCHINGR01DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1992 to 2011
$1.6M
Mechanism of Gamma-Globin Gene Activation in the AdultR01DK061805 · NIDDK · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2001 to 2004
$1.5M
Globin Gene Switching: Molecular ControlR56DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 2007 to 2007
$78k
NHLBI NIH HHS HL73439NHLBI NIH HHS R01 HL073439NIDDK NIH HHS DK45365NIDDK NIH HHS R01 DK045365NIDDK NIH HHS R01 DK061805NIDDK NIH HHS R37 DK045365NIDDK NIH HHS R56 DK045365
6 · The paper itself

Abstract

To delineate the relationship between epigenetic modifications and hemoglobin switching, we compared the pattern of histone acetylation and pol II binding across the beta-globin locus at fetal and adult stages of human development. To make this comparison possible, we introduced an external control into experimental samples in chromatin immunoprecipitation (ChIP) assays. Using this common standard, we found that the locus control region (LCR) was acetylated to the same level at all stages, whereas acetylation levels at the individual gene regions correlated with the state of transcription. In the active genes, the promoters were less acetylated compared with the coding regions. Furthermore, all globin promoters were acetylated to a similar level irrespective of the state of transcription. However, after correction for the loss of nucleosomes, the level of acetylation per histone at the active gamma and beta promoters was 5- to 7-fold greater than that at the inactive epsilon promoter. Although the histone acetylation level within the LCR was developmentally stable, pol II binding in fetal erythroblasts was 2- to 3-fold greater than that in adult erythroblasts. These results demonstrate that dynamic changes in histone acetylation and pol II take place as the human beta-globin gene region undergoes its developmental switches.

Indexed as

AcetylationAdultAgingChromatin ImmunoprecipitationDNA Polymerase IIErythroblastsFetusGlobinsHistonesHumansLocus Control RegionNucleosomesPromoter Regions, GeneticQuantitative Trait LociTranscription, GeneticDNA Polymerase IIGlobinsHistonesNucleosomes

Identifiers

PMID17881636
PMCPMC2190615
OpenAlexW2047981620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.