Evidence map›Paper›PMID 17879959›Full record

ArticleJournal of cellular biochemistry2008

Mouse spermatozoa contain a nuclease that is activated by pretreatment with EGTA and subsequent calcium incubation.

Segal M Boaz, Kenneth Dominguez, Jeffrey A Shaman, W Steven Ward

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular biochemistry, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Functional Aspects of Sperm Chromatin Organization.Results and problems in cell differentiation · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
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  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. A novel nuclease activity that is activated by Ca(2+) chelated to EGTA.Systems biology in reproductive medicine · 2009
    Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Segal M BoazInstitute for Biogenesis Research, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI 96822, USA.
Kenneth Dominguez
Jeffrey A Shaman
W Steven Ward
University of Hawaiʻi at Mānoa · US

Funding

WILLINGNESS OF PRIMARY CARE PHYSICIANS TO ADOPT HANDHELD COMPUTINGP20RR011091 · NCRR · UNIVERSITY OF HAWAII AT MANOA · PI ERDEM, GULIZ · 1995 to 2009
$16.5M
ORGANIZATION OF DNA IN THE MAMMALIAN SPERM NUCLEUSR01HD028501 · NICHD · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI WARD, WILLIAM S · 1998 to 2005
$1.2M
ORGANIZATION OF DNA IN THE MAMMALIAN SPERM NUCLEUSR29HD028501 · NICHD · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI WARD, WILLIAM S · 1991 to 1995
–
NCRR NIH HHS P20 RR011091NICHD NIH HHS HD28501NICHD NIH HHS R01 HD028501
6 · The paper itself

Abstract

We demonstrated that mouse spermatozoa cleave their DNA into approximately 50 kb loop-sized fragments with topoisomerase IIB when treated with MnCl(2) and CaCl(2) in a process we term sperm chromatin fragmentation (SCF). SCF can be reversed by EDTA. A nuclease then further degrades the DNA in a process we term sperm DNA degradation (SDD). MnCl(2) alone could elicit this activity, but CaCl(2) had no effect. Here, we demonstrate the existence of a nuclease in the vas deferens that can be activated by ethylene glycol tetraacetic acid (EGTA) to digest the sperm DNA by SDD. Spermatozoa were extracted with salt and dithiothreitol to remove protamines and then incubated with EGTA. Next, the EGTA was removed and divalent cations were added. We found that Mn(2+), Ca(2+), or Zn(2+) could each activate SDD in spermatozoa but Mg(2+) could not. When the reaction was slowed by incubation on ice, EGTA pretreatment followed by incubation in Ca(2+) elicited the reversible fragmentation of sperm DNA evident in SCF. When the reactions were then incubated at 37 degrees C they progressed to the more complete degradation of DNA by SDD. EDTA could also be used to activate the nuclease, but required a higher concentration than EGTA. This EGTA-activatable nuclease activity was found in each fraction of the vas deferens plasma: in the spermatozoa, in the surrounding fluid, and in the insoluble components in the fluid. These results suggest that this sperm nuclease is regulated by a mechanism that is sensitive to EGTA, possibly by removing inhibition of a calcium binding protein.

Indexed as

AnimalsCalciumCalcium-Binding ProteinsCalcium ChlorideCations, DivalentChelating AgentsChloridesChromatinDeoxyribonucleasesDNA-Binding ProteinsDNA FragmentationDNA Topoisomerases, Type IIEgtazic AcidEnzyme ActivationMaleManganese CompoundsCalciumCalcium-Binding ProteinsCalcium ChlorideCations, DivalentChelating AgentsChloridesChromatinDeoxyribonucleasesDNA-Binding ProteinsDNA Topoisomerases, Type IIEgtazic Acidmanganese chlorideManganese Compounds

Identifiers

PMID17879959
PMCPMC2679532
OpenAlexW2061974398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.