Evidence map›Paper›PMID 17879239›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2007

Cytometric assessment of DNA damage by exogenous and endogenous oxidants reports aging-related processes.

Hong Zhao, Toshiki Tanaka, H Dorota Halicka, Frank Traganos, Miroslaw Zarebski, Jurek Dobrucki, Zbigniew Darzynkiewicz

Open access · bronzeAbstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. The Role ofGenes · 2021
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  4. Article
  5. Review
  6. Article
  7. In search of antiaging modalities: evaluation of mTOR- and ROS/DNA damage-signaling by cytometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2014
    Review
  8. DNA damage signaling, impairment of cell cycle progression, and apoptosis triggered by 5-ethynyl-2'-deoxyuridine incorporated into DNA.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Biomarkers of cell senescence assessed by imaging cytometry.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  13. Laser scanning cytometry: principles and applications-an update.Methods in molecular biology (Clifton, N.J.) · 2013
    Review
  14. Article
  15. Article
  16. Article
  17. 3-Bromopyruvate: targets and outcomes.Journal of bioenergetics and biomembranes · 2012
    Review
  18. Review
  19. Article
  20. Induction of DNA damage signaling by oxidative stress in relation to DNA replication as detected using "click chemistry".Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2011
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Hong ZhaoBrander Cancer Research Institute, New York Medical College, Valhalla, New York 10595, USA.
Toshiki Tanaka
H Dorota Halicka
Frank Traganos
Miroslaw Zarebski
Jurek Dobrucki
Zbigniew Darzynkiewicz
New York Medical College · USJagiellonian University · PLYamaguchi University · JP

Funding

PROBES FOR FLOW CYTOMETRYR01CA028704 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI DARZYNKIEWICZ, ZBIGNIEW · 1985 to 2014
$6.0M
NCI NIH HHS CA 28704NCI NIH HHS R01 CA028704
6 · The paper itself

Abstract

The ongoing DNA damage caused by reactive oxygen species generated during oxidative metabolism is considered a key factor contributing to cell aging as well as preconditioning cells to neoplastic transformation. We postulated before that a significant fraction of constitutive histone H2AX phosphorylation (CHP) and constitutive activation of ATM (CAA) seen in untreated normal and tumor cells occurs in response to such DNA damage. In the present study, we provide further evidence in support of this postulate. The level of ATM activation and H2AX phosphorylation, detected immunocytochemically, has been monitored in WI-38, A549, and TK6 cells treated with H2O2 as well as growing under conditions known or suspected to affect the level of endogenous oxidants. Thirty- to 60-min exposure of cells to 100 or 200 microM H2O2 led to an increase in the level of H2AX phosphorylation and ATM activation, particularly pronounced (nearly fivefold) in S-phase cells. Cell growth for 24-48 h under hypoxic conditions (3% O2) distinctly lowered the level of CHP and CAA while it had minor effect on cell cycle progression. Treatment (4 h) with 0.1 or 0.3 mM 3-bromopyruvate, an inhibitor of glycolysis and mitochondrial oxidative phosphorylation, reduced the level of CHP (up to fourfold) and also decreased the level of CAA. Growth of WI-38 cells in 2% serum concentration for 48 h led to a 25 and 30% reduction in CHP and CHA, respectively, compared with cells growing in 10% serum. The antioxidant vitamin C (2 mM) reduced CHP and CAA by 20-30% after 24 h of treatment, while the COX-2 inhibitor celecoxib (5 microM) had a minor effect on CHP and CAA, though it decreased the level of H2O2-induced H2AX phosphorylation and ATM activation. In contrast, dichloroacetate known to shift metabolism from anaerobic to oxidative glycolysis through its effect on pyruvate dehydrogenase kinase enhanced the level of CHP and CAA. Our present data and earlier observations strongly support the postulate that a large fraction of CHP and CAA occurs in response to DNA damage caused by metabolically generated oxidants. Cytometric analysis of CHP and CAA provides the means to measure the effectiveness of exogenous factors, which either through lowering aerobic metabolism or neutralizing radicals may protect DNA from such damage.

Indexed as

DNA DamageAgingAnimalsAntioxidantsAscorbic AcidAtaxia Telangiectasia Mutated ProteinsCelecoxibCell Cycle ProteinsCell LineDichloroacetic AcidDNA-Binding ProteinsEnzyme ActivationEnzyme InhibitorsHistonesHumansHydrogen PeroxideAntioxidantsAscorbic AcidAtaxia Telangiectasia Mutated ProteinsATM protein, humanbromopyruvateCelecoxibCell Cycle ProteinsDichloroacetic AcidDNA-Binding ProteinsEnzyme InhibitorsHistonesHydrogen PeroxideOxidantsOxygenProtein Serine-Threonine KinasesPyrazolesPyruvatesSulfonamidesTumor Suppressor Proteins

Identifiers

PMID17879239
PMCPMC3860741
OpenAlexW2051037053

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.