Evidence map›Paper›PMID 17877341›Full record

ArticleJournal of the American Chemical Society2007

Stereospecific synthesis and characterization of oligodeoxyribonucleotides containing an N2-(1-carboxyethyl)-2'-deoxyguanosine.

Huachuan Cao, Yong Jiang, Yinsheng Wang

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. LC-MS/MS for Assessing the Incorporation and Repair ofChemical research in toxicology · 2022
    Article
  4. Article
  5. The Impact of Minor-GrooveACS chemical biology · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Glycation Reactivity of a Quorum-Sensing Signaling Molecule.Angewandte Chemie (International ed. in English) · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Efficient and accurate bypass of N2-(1-carboxyethyl)-2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Huachuan CaoDepartment of Chemistry, University of California, Riverside, California 92521-0403, USA.
Yong Jiang
Yinsheng Wang
University of California, Riverside · US

Funding

Oxidative DNA Damage and CpG MutagenesisR01CA101864 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2004 to 2015
$2.8M
ROS-induced Nucleic Acid DamageR01CA096906 · NCI · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2002 to 2006
$895k
NCI NIH HHS R01 CA096906NCI NIH HHS R01 CA101864NCI NIH HHS R01 CA96906
6 · The paper itself

Abstract

Methylglyoxal is a highly reactive alpha-ketoaldehyde that is produced endogenously and present in the environment and foods. It can modify DNA and proteins to form advanced glycation end products (AGEs). Emerging evidence has shown that N2-(1-carboxyethyl)-2'-deoxyguanosine (N2-CEdG) is a major marker for AGE-linked DNA adducts. Here, we report, for the first time, the preparation of oligodeoxyribonucleotides (ODNs) containing individual diastereomers of N2-CEdG via a postoligomerization synthesis method, which provided authentic substrates for examining the replication and repair of this lesion. In addition, thermodynamic parameters derived from melting temperature data revealed that the two diastereomers of N2-CEdG destabilized significantly the double helix as represented by a 4 kcal/mol increase in Gibbs free energy for duplex formation at 25 degrees C. Primer extension assay results demonstrated that both diastereomers of N2-CEdG could block considerably the replication synthesis mediated by the exonuclease-free Klenow fragment of Escherichia coli DNA polymerase I. Strikingly, the polymerase incorporated incorrect nucleotides, dGMP and dAMP, opposite the lesion more preferentially than the correct nucleotide, dCMP.

Indexed as

Circular DichroismDeoxyadenine NucleotidesDeoxyguanine NucleotidesDeoxyguanosineDNADNA Polymerase IDNA ReplicationEscherichia coliOligodeoxyribonucleotidesSpectrometry, Mass, Electrospray IonizationStereoisomerismThermodynamics2'-deoxy-5'-adenosine monophosphate2'-deoxyguanosine 5'-phosphateDeoxyadenine NucleotidesDeoxyguanine NucleotidesDeoxyguanosineDNADNA Polymerase IN(2)-(1-carboxyethyl)deoxyguanosineOligodeoxyribonucleotides

Identifiers

PMID17877341
PMCPMC3169888
OpenAlexW2070219690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.