Evidence map›Paper›PMID 17875925›Full record

ArticleMolecular and cellular biology2007

In vivo analysis of developmentally and evolutionarily dynamic protein-DNA interactions regulating transcription of the Pgk2 gene during mammalian spermatogenesis.

Hirotaka Yoshioka, Christopher B Geyer, Jacey L Hornecker, Krishan T Patel, John R McCarrey

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

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  15. MYBBP1A: a new Ipr1's binding protein in mice.Molecular biology reports · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Hirotaka YoshiokaDepartment of Biology, University of Texas at San Antonio, San Antonio, Texas 78249, USA.
Christopher B Geyer
Jacey L Hornecker
Krishan T Patel
John R McCarrey
The University of Texas at San Antonio · USThe University of Texas Health Science Center at San Antonio · US

Funding

UTSA RISE Research Training ProgramR25GM060655 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI BAREA-RODRIGUEZ, EDWIN J · 2000 to 2022
$21.6M
Regulation of a Spermatogenesis-Specific GeneR01HD046637 · NICHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI MCCARREY, JOHN R · 2005 to 2009
$1.5M
NICHD NIH HHS HD46637NICHD NIH HHS R01 HD046637NIGMS NIH HHS GM60655NIGMS NIH HHS R25 GM060655
6 · The paper itself

Abstract

Transcription of the testis-specific Pgk2 gene is selectively activated in primary spermatocytes to provide a source of phosphoglycerate kinase that is critical to normal motility and fertility of mammalian spermatozoa. We examined dynamic changes in protein-DNA interactions at the Pgk2 gene promoter during murine spermatogenesis in vivo by performing genomic footprinting and chromatin immunoprecipitation assays with enriched populations of murine spermatogenic cells at stages prior to, during, and following transcription of this gene. We found that genes encoding the testis-specific homeodomain factor PBX4 and its coactivator, PREP1, are expressed in patterns that mirror expression of the Pgk2 gene and that these factors become bound to the Pgk2 enhancer in cells in which this gene is actively expressed. We therefore suggest that these factors, along with CREM and SP3, direct stage- and cell type-specific transcription of the Pgk2 gene during spermatogenesis. We propose that binding of PBX4, plus its coactivator PREP1, is a rate-limiting step leading to the initiation of tissue-specific transcription of the Pgk2 gene. This study provides insight into the developmentally dynamic establishment of tissue-specific protein-DNA interactions in vivo. It also allows us to speculate about the events that led to tissue-specific regulation of the Pgk2 gene during mammalian evolution.

Indexed as

Biological EvolutionGene Expression Regulation, DevelopmentalPromoter Regions, GeneticTranscription, GeneticAnimalsBase SequenceDNA-Binding ProteinsDNA FootprintingGene Expression ProfilingHomeodomain ProteinsHumansIsoenzymesMaleMiceMolecular Sequence DataPhosphoglycerate KinaseDNA-Binding ProteinsHomeodomain ProteinsIsoenzymesPbx4 protein, mousePhosphoglycerate Kinasephosphoglycerate kinase, testis specificPknox1 protein, mouse

Identifiers

PMID17875925
PMCPMC2169153
OpenAlexW2002857192

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.