Evidence map›Paper›PMID 17873088›Full record

ArticlePlant physiology2007

Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5'-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B6 salvage pathway.

Eugenia González, David Danehower, Margaret E Daub

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 75 citations in OpenAlex.

  1. Proteomic analysis may explain differences inPlant signaling & behavior · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Multiple forms of vitamin BStress biology · 2022
    Article
  6. Article
  7. Article
  8. Metabolomic Profiles of the Creeping Wood SorrelLife (Basel, Switzerland) · 2022
    Article
  9. Role of vitamins in the metabolic syndrome and cardiovascular disease.Pflugers Archiv : European journal of physiology · 2022
    Review
  10. Article
  11. Article
  12. Enhancement of vitamin BThe Plant journal : for cell and molecular biology · 2019
    Article
  13. Article
  14. Article
  15. Multiple roles for Vitamin BScientific reports · 2019
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. AtPep3 is a hormone-like peptide that plays a role in the salinity stress tolerance of plants.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Eugenia GonzálezDepartment of Plant Biology, North Carolina State University, Raleigh, North Carolina 27695-7612, USA.
David Danehower
Margaret E Daub
North Carolina State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PDX3 and SALT OVERLY SENSITIVE4 (SOS4), encoding pyridoxine/pyridoxamine 5'-phosphate oxidase and pyridoxal kinase, respectively, are the only known genes involved in the salvage pathway of pyridoxal 5'-phosphate in plants. In this study, we determined the phenotype, stress responses, vitamer levels, and regulation of the vitamin B(6) pathway genes in Arabidopsis (Arabidopsis thaliana) plants mutant in PDX3 and SOS4. sos4 mutant plants showed a distinct phenotype characterized by chlorosis and reduced plant size, as well as hypersensitivity to sucrose in addition to the previously noted NaCl sensitivity. This mutant had higher levels of pyridoxine, pyridoxamine, and pyridoxal 5'-phosphate than the wild type, reflected in an increase in total vitamin B(6) observed through HPLC analysis and yeast bioassay. The sos4 mutant showed increased activity of PDX3 as well as of the B(6) de novo pathway enzyme PDX1, correlating with increased total B(6) levels. Two independent lines with T-DNA insertions in the promoter region of PDX3 (pdx3-1 and pdx3-2) had decreased PDX3 activity. Both also had decreased activity of PDX1, which correlated with lower levels of total vitamin B(6) observed using the yeast bioassay; however, no differences were noted in levels of individual vitamers by HPLC analysis. Both pdx3 mutants showed growth reduction in vitro and in vivo as well as an inability to increase growth under high light conditions. Increased expression of salvage and some of the de novo pathway genes was observed in both the pdx3 and sos4 mutants. In all mutants, increased expression was more dramatic for the salvage pathway genes.

Indexed as

ArabidopsisArabidopsis ProteinsCarbon-Nitrogen LyasesChromatography, High Pressure LiquidCloning, MolecularCold TemperatureDNA, BacterialDNA, PlantGene Expression Regulation, PlantLightMannitolMolecular StructureMutagenesis, InsertionalMutationNitrogenous Group TransferasesPhenotypeArabidopsis ProteinsAt2g38230 protein, ArabidopsisCarbon-Nitrogen LyasesDNA, BacterialDNA, PlantMannitolNitrogenous Group TransferasesPyridoxal KinasePyridoxaminephosphate OxidaseSodium ChlorideSucroseT-DNAVitamin B 6Water

Identifiers

PMID17873088
PMCPMC2048783
OpenAlexW2153686019

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.