ArticleBMC bioinformatics2007
Integrating sequence and structural biology with DAS.
Article in BMC bioinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
41 citing papers in PubMed.
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- Molecular insights into TP53 mutation (p. Arg267Trp) and its connection to Choroid Plexus Carcinomas and Li-Fraumeni Syndrome.Genes & genomics · 2024Article
- A computational workflow for analysis of missense mutations in precision oncology.Journal of cheminformatics · 2024Article
- Association of functional variants and protein-to-protein physical interactions of human MutY homolog linked with familial adenomatous polyposis and colorectal cancer syndrome.Non-coding RNA research · 2019Article
- Structural and Functional Analysis of human lung cancer risk associated hOGG1 variant Ser326Cys in DNA repair gene by molecular dynamics simulation.Non-coding RNA research · 2019Article
- Molecular Analysis of Factor VIII and Factor IX Genes in Hemophilia Patients: Identification of Novel Mutations and Molecular Dynamics Studies.Journal of clinical medicine research · 2017Article
- BLAST-based structural annotation of protein residues using Protein Data Bank.Biology direct · 2016Article
- QMachine: commodity supercomputing in web browsers.BMC bioinformatics · 2014Article
- Hierarchical ensemble methods for protein function prediction.ISRN bioinformatics · 2014Review
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- D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements.BMC bioinformatics · 2013Article
- GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update.Nucleic acids research · 2013Article
- Association between PARP-1 V762A polymorphism and breast cancer susceptibility in Saudi population.PloS one · 2013Article
- The Protein Model Portal--a comprehensive resource for protein structure and model information.Database : the journal of biological databases and curation · 2013Article
- Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans.Mammalian genome : official journal of the International Mammalian Genome Society · 2012Article
- Article
- SNPedia: a wiki supporting personal genome annotation, interpretation and analysis.Nucleic acids research · 2012Article
- Meet me halfway: when genomics meets structural bioinformatics.Journal of cardiovascular translational research · 2011Article
- Customizable views on semantically integrated networks for systems biology.Bioinformatics (Oxford, England) · 2011Article
- easyDAS: automatic creation of DAS servers.BMC bioinformatics · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
backgroundThe Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence.
resultsHere we present several extensions to the current DAS 1.5 protocol. These provide new commands to share alignments, three dimensional molecular structure data, add the possibility for registration and discovery of DAS servers, and provide a convention how to provide different types of data plots. We present examples of web sites and applications that use the new extensions. We operate a public registry of DAS sources, which now includes entries for more than 250 distinct sources.
conclusionOur DAS extensions are essential for the management of the growing number of services and exchange of diverse biological data sets. In addition the extensions allow new types of applications to be developed and scientific questions to be addressed. The registry of DAS sources is available at http://www.dasregistry.org.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.