Evidence map›Paper›PMID 17846820›Full record

ArticleJournal of molecular evolution2007

Two paralogous genes encoding small subunits of ADP-glucose pyrophosphorylase in maize, Bt2 and L2, replace the single alternatively spliced gene found in other cereal species.

Sandrine Rösti, Kay Denyer

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Journal of molecular evolution, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. Article
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  9. AGPase: its role in crop productivity with emphasis on heat tolerance in cereals.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Review
  10. Article
  11. Article
  12. Article
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  15. Article
  16. Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Contrasted patterns of selection since maize domestication on duplicated genes encoding a starch pathway enzyme.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  18. Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Sandrine RöstiJohn Innes Centre, Norwich Research Park, Norfolk, UK.
Kay Denyer
John Innes Centre · GBNorwich Research Park · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two types of gene encoding small subunits (SSU) of ADP-glucose pyrophosphorylase, a starch-biosynthetic enzyme, have been found in cereals and other grasses. One of these genes encodes two SSU proteins. These are targeted to different subcellular compartments and expressed in different organs of the plant: the endosperm cytosol and the leaf plastids. The SSU gene encoding two proteins evolved from an ancestral gene encoding a single protein by the acquisition of an alternative first exon. Prior to the work reported here, this type of SSU gene had been found in all grasses examined except maize. In maize, two separate genes, Bt2 and L2, were known to have the same roles as the alternatively spliced gene found in other grasses. The evolutionary origin of these maize genes and their relationship to the SSU genes in other grasses were unclear. Here we show that Bt2 and L2 are paralogous genes that arose as a result of the tetraploidization of the maize genome. Both genes derive from an ancestral alternatively spliced SSU gene orthologous to that found in other grasses. Following duplication, the Bt2 and L2 genes diverged in function. Each took a different one of the two functions of the ancestral gene. Now Bt2 encodes the endosperm cytosolic SSU but does not contribute significantly to leaf AGPase activity. Similarly, L2 has lost the use of one of its two alternative first exons. It can no longer contribute to the endosperm cytosolic SSU but is probably responsible for the bulk of the leaf AGPase SSU.

Indexed as

Alternative SplicingBase SequenceCloning, MolecularDNA, ComplementaryDNA, PlantEdible GrainGene Expression Regulation, EnzymologicGlucose-1-Phosphate AdenylyltransferaseModels, BiologicalMolecular Sequence DataPhylogenyPolyploidyProtein SubunitsSequence Homology, Nucleic AcidSpecies SpecificityTissue DistributionDNA, ComplementaryDNA, PlantGlucose-1-Phosphate AdenylyltransferaseProtein Subunits

Identifiers

PMID17846820
OpenAlexW2079068595

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.