Evidence map›Paper›PMID 17846119›Full record

ArticleMolecular and cellular biology2007

USF1 recruits histone modification complexes and is critical for maintenance of a chromatin barrier.

Suming Huang, Xingguo Li, Timur M Yusufzai, Yi Qiu, Gary Felsenfeld

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 121 citations in OpenAlex.

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  10. Role of Isocitrate Dehydrogenase 2 on DNA Hydroxymethylation in Human Airway Smooth Muscle Cells.American journal of respiratory cell and molecular biology · 2020
    Article
  11. Article
  12. Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse.Proceedings of the National Academy of Sciences of the United States of America · 2019
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Suming HuangLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0540, USA. sumingh@ufl.edu
Xingguo Li
Timur M Yusufzai
Yi Qiu
Gary Felsenfeld
University of Florida · USFlorida College · USNational Institute of Diabetes and Digestive and Kidney Diseases · USNational Institutes of Health · US

Funding

Barrier insulatorsZIADK036152 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI FELSENFELD, GARY · 2009 to 2013
$1.5M
Barrier insulatorsZ01DK036152 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI FELSENFELD, GARY · 2007 to 2008
$739k
Intramural NIH HHS
6 · The paper itself

Abstract

The insulator element at the 5' end of the chicken beta-globin locus acts as a barrier, protecting transgenes against silencing effects of adjacent heterochromatin. We showed earlier that the transcription factor USF1 binds within the insulator and that this site is important for generating in adjacent nucleosomes histone modifications associated with active chromatin and, by inference, with barrier function. To understand the mechanism of USF1 action, we have characterized USF1-containing complexes. USF1 interacts directly with the histone H4R3-specific methyltransferase PRMT1. USF1, PRMT1, and the histone acetyltransferases (HATs) PCAF and SRC-1 form a complex with both H4R3 histone methyltransferase and HAT activities. Small interfering RNA downregulation of USF1 results in localized loss of H4R3 methylation, and other histone modifications associated with euchromatin, at the insulator. A dominant negative peptide that interferes with USF1 binding to DNA causes silencing of an insulated reporter construct, indicating abolition of barrier function. These results show that USF1 plays a direct role in maintaining the barrier, supporting a model in which the insulator works as a barrier by maintaining a local environment of active chromatin.

Indexed as

Gene Expression RegulationAnimalsCell LineChickensChromatinErythrocytesGene SilencingHistonesNucleic Acid Conformationp300-CBP-Associated Factorp300-CBP Transcription FactorsProtein-Arginine N-MethyltransferasesRecombinant Fusion ProteinsRNA Polymerase IIRNA, Small InterferingTranscription FactorsChromatinHistonesp300-CBP-Associated Factorp300-CBP Transcription FactorsProtein-Arginine N-MethyltransferasesRecombinant Fusion ProteinsRNA Polymerase IIRNA, Small InterferingTranscription FactorsUpstream Stimulatory Factors

Identifiers

PMID17846119
PMCPMC2169148
OpenAlexW2089200494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.