Evidence map›Paper›PMID 17828574›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2007

Genetic variation in C57BL/6 ES cell lines and genetic instability in the Bruce4 C57BL/6 ES cell line.

Elizabeth D Hughes, Yun Yan Qu, Suzanne J Genik, Robert H Lyons, Christopher D Pacheco, Andrew P Lieberman, Linda C Samuelson, Igor O Nasonkin, Sally A Camper, Margaret L Van Keuren and 1 more

Abstract read
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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
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  6. A genetic model forOpen biology · 2022
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  8. Fast and efficient generation of a full-length balancer chromosome by a single Cre/loxP recombination event.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Article
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  16. Mechanically activated ion channel PIEZO1 is required for lymphatic valve formation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Elizabeth D HughesTransgenic Animal Model Core, Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
Yun Yan Qu
Suzanne J Genik
Robert H Lyons
Christopher D Pacheco
Andrew P Lieberman
Linda C Samuelson
Igor O Nasonkin
Sally A Camper
Margaret L Van Keuren
Thomas L Saunders
University of Michigan–Ann Arbor · USJohns Hopkins Medicine · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OWYANG, CHUNG · 1986 to 2021
$22.5M
Research DevelopmentP30AG013283 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MILLER, RICHARD A · 1995 to 2014
$12.3M
CELL-SPECIFIC EXPRESSION IN THE PITUITARY GLANDR01HD034283 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAMPER, SALLY A. · 1996 to 2021
$7.7M
A Panhypopitutitary Mouse MutationR37HD030428 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CAMPER, SALLY A. · 2002 to 2011
$3.4M
UNIVERSITY OF MICHIGAN MULTIPURPOSE ARTHRITIS CENTERP60AR020557 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SOWERS, MARYFRAN R · 1986 to 2001
$2.9M
NCI NIH HHS CA46592NIAMS NIH HHS AR20557NIA NIH HHS AG13283NICHD NIH HHS R01HD034283NICHD NIH HHS R37HD030428NIDDK NIH HHS DK034933
6 · The paper itself

Abstract

Genetically modified mouse strains derived from embryonic stem (ES) cells are powerful tools for gene function analysis. ES cells from the C57BL/6 mouse strain are not widely used to generate mouse models despite the advantage of a defined genetic background. We assessed genetic variation in six such ES cell lines with 275 SSLP markers. Compared to C57BL/6, Bruce4 differed at 34 SSLP markers and had significant heterozygosity on three chromosomes. BL/6#3 and Dale1 ES cell lines differed at only 3 SSLP makers. The C2 and WB6d ES cell lines differed at 6 SSLP markers. It is important to compare the efficiency of producing mouse models with available C57BL/6 ES cells relative to standard 129 mouse strain ES cells. We assessed genetic stability (the tendency of cells to become aneuploid) in 110 gene-targeted ES cell clones from the most widely used C57BL/6 ES cell line, Bruce4, and 710 targeted 129 ES cell clones. Bruce4 clones were more likely to be aneuploid and unsuitable for ES cell-mouse chimera production. Despite their tendency to aneuploidy and consequent inefficiency, use of Bruce4 ES cells can be valuable for models requiring behavioral studies and other mouse models that benefit from a defined C57BL/6 background.

Indexed as

Embryonic Stem CellsGenetic VariationGenomic InstabilityAnimalsCell LineChromosome MappingChromosomes, MammalianClone CellsMiceMice, Inbred C57BL

Identifiers

PMID17828574
OpenAlexW2129401976

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.