Evidence map›Paper›PMID 17827213›Full record

ArticleNucleic acids research2007

Tip60 functions as a potential corepressor of KLF4 in regulation of HDC promoter activity.

Walden Ai, Hai Zheng, Xiangdong Yang, Ying Liu, Timothy C Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  6. Anti-Allergic Effects ofAntioxidants (Basel, Switzerland) · 2021
    Article
  7. Histamine and histidine decarboxylase: Immunomodulatory functions and regulatory mechanisms.Genes to cells : devoted to molecular & cellular mechanisms · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Walden AiDivision of Digestive and Liver Diseases, Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA. wa2108@columbia.edu
Hai Zheng
Xiangdong Yang
Ying Liu
Timothy C Wang
Columbia University Irving Medical Center · USUnion Hospital · CN

Funding

THE FUNCTION AND REGULATION OF HISTIDINE DECARBOXYLASE IN GUT INFLAMMATIONR01DK048077 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WANG, TIMOTHY CRAGIN · 1995 to 2020
$5.9M
Structural Studies and Functional Regulation of KLF4K01DK069489 · NIDDK · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI AI, WALDEN · 2006 to 2009
$519k
NIDDK NIH HHS K01 DK069489NIDDK NIH HHS R01 DK048077NIDDK NIH HHS R01 DK-48077
6 · The paper itself

Abstract

KLF4 is a transcription factor that is highly expressed in the gastrointestinal tract. Previously we have demonstrated that KLF4 represses HDC promoter activity in a gastric cell line through both an upstream Sp1 binding GC box and downstream gastrin responsive elements. However, the mechanism by which KLF4 inhibits HDC promoter is not well defined. In the current study, by using yeast two-hybrid screening, Tip60 was identified as a KLF4 interacting protein. Further coimmunoprecipitation and functional reporter assays support the interaction between these two proteins. In addition, Tip60 and HDAC7, previously shown to interact with each other and repress transcription, inhibited HDC promoter activity in a dose-dependent fashion. Consistently, knock down of Tip60 or HDAC7 gene expression by specific shRNA increased endogenous HDC mRNA level. Co-immunoprecipitation assays showed that HDAC7 was pulled down by KLF4 and Tip60, suggesting that these three proteins form a repressive complex. Further chromatin immuno-precipitation indicated that all three proteins associated with HDC promoter. Two-hour gastrin treatment, known to activate HDC gene expression, significantly decreased the association of KLF4, Tip60 and HDAC7 with HDC promoter, suggesting that gastrin activates HDC gene expression at least partly by decreasing the formation of KLF4/Tip60/HDAC7 repressive complexes at the HDC promoter.

Indexed as

Gene Expression Regulation, EnzymologicCell LineChromatin ImmunoprecipitationGastrinsHistidine DecarboxylaseHistone AcetyltransferasesHistone DeacetylasesHumansImmunoprecipitationKruppel-Like Factor 4Kruppel-Like Transcription FactorsLysine Acetyltransferase 5Promoter Regions, GeneticRepressor ProteinsTwo-Hybrid System TechniquesGastrinsHDAC7 protein, humanHistidine DecarboxylaseHistone AcetyltransferasesHistone DeacetylasesKAT5 protein, humanKLF4 protein, humanKruppel-Like Factor 4Kruppel-Like Transcription FactorsLysine Acetyltransferase 5Repressor Proteins

Identifiers

PMID17827213
PMCPMC2094084
OpenAlexW2148229098

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.