Evidence map›Paper›PMID 17826407›Full record

ArticleAmerican journal of obstetrics and gynecology2007

Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition.

Sonia S Hassan, Roberto Romero, Adi L Tarca, Sorin Draghici, Beth Pineles, Andrej Bugrim, Nahla Khalek, Natalia Camacho, Pooja Mittal, Bo Hyun Yoon and 4 more

Open access · greenAbstract read
In one paragraph

Article in American journal of obstetrics and gynecology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 49 citations in OpenAlex.

  1. Trial
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  6. A key role for NLRP3 signaling in preterm labor and birth driven by the alarmin S100B.Translational research : the journal of laboratory and clinical medicine · 2023
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  9. Gasdermin D:The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Sonia S HassanDepartment of Obstetrics and Gynecology, Wayne State University School of Medicine, Detroit, MI, USA. shassan@med.wayne.edu
Roberto Romero
Adi L Tarca
Sorin Draghici
Beth Pineles
Andrej Bugrim
Nahla Khalek
Natalia Camacho
Pooja Mittal
Bo Hyun Yoon
Jimmy Espinoza
Chong Jai Kim
Yoram Sorokin
John Malone
Wayne State University · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USUnited States Department of Health and Human Services · USSeoul National University · KR

Funding

Tumor Biology and Microenvironment (Program 1)P30CA022453 · NCI · WAYNE STATE UNIVERSITY · PI Jennifer L Beebe-Dimmer · 1985 to 2026
$68.4M
THE ROLE OF SUBCLINICAL INFECTION AND CYTOKINES IN PRETERM PARTURITIONZ01HD002400 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI ROMERO, ROBERTO · 1992 to 2008
$8.2M
Early Detection of Breast Cancer Using Autoantibody Mar*U01CA117478 · NCI · WAYNE STATE UNIVERSITY · PI TAINSKY, MICHAEL A · 2005 to 2009
$3.3M
Activity-Dependent Gene Expression in Human EpilepsyR01NS045207 · NINDS · WAYNE STATE UNIVERSITY · PI LOEB, JEFFREY A · 2003 to 2010
$2.1M
Novel Algorithms &Organisms for Onto-ToolsR01HG003491 · NHGRI · WAYNE STATE UNIVERSITY · PI DRAGHICI, SORIN · 2005 to 2007
$877k
Software tools for pediatric neuroimagingR21EB000990 · NIBIB · WAYNE STATE UNIVERSITY · PI MUZIK, OTTO · 2002 to 2004
$442k
Markers for the Early Detection of Ovarian CancerR21CA100740 · NCI · WAYNE STATE UNIVERSITY · PI TAINSKY, MICHAEL A · 2003 to 2003
$151k
Intramural NIH HHS Z01 HD002400NCI NIH HHS 1R21CA 100740-01NCI NIH HHS 1U01CA117478-01NCI NIH HHS 2P30CA022453-24NCI NIH HHS P30 CA022453NCI NIH HHS R21 CA100740NCI NIH HHS U01 CA117478NHGRI NIH HHS 1RH01HG003491-01A1NHGRI NIH HHS R01 HG003491NIBIB NIH HHS 5R21EB000990-03NIBIB NIH HHS R21 EB000990NINDS NIH HHS 1R01NS045207-01NINDS NIH HHS R01 NS045207
6 · The paper itself

Abstract

objectiveThis study aimed to discover "signature pathways" that characterize biologic processes, based on genes differentially expressed in the uterine cervix before and after spontaneous labor. STUDY

designThe cervical transcriptome was characterized previously from biopsy specimens taken before and after term labor. Pathway analysis was used to study the differentially expressed genes, based on 2 gene-to-pathway annotation databases (Kyoto Encyclopedia of Genes and Genomes [Kanehisa Laboratories, Kyoto University, Kyoto, Japan] and Metacore software [GeneGo, Inc, St. Joseph, MI]). Overrepresented and highly impacted pathways and connectivity nodes were identified.

resultsFifty-two pathways in the Metacore database were enriched significantly in differentially expressed genes. Three of the top 5 pathways were known to be involved in cervical remodeling. Two novel pathways were plasmin signaling and plasminogen activator urokinase signaling. The same analysis with the Kyoto Encyclopedia of Genes and Genomes database identified 4 significant pathways that the impact analysis confirmed. Multiple nodes that provide connectivity within the plasmin and plasminogen activator urokinase signaling pathways were identified.

conclusionThree strategies for pathway analysis were consistent in their identification of novel, unexpected, and expected pathways, which suggests that this approach is both valid and effective for the elucidation of biologic mechanisms that are involved in cervical dilation and remodeling.

Indexed as

Gene Expression ProfilingCervix UteriCesarean SectionCross-Sectional StudiesFemaleHumansLabor, ObstetricPregnancySignal TransductionTerm Birth

Identifiers

PMID17826407
PMCPMC2556276
OpenAlexW2088588640

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.