Evidence map›Paper›PMID 17822919›Full record

ArticleMolecular and cellular neurosciences2007

A SAGE study of apolipoprotein E3/3, E3/4 and E4/4 allele-specific gene expression in hippocampus in Alzheimer disease.

Pu-Ting Xu, Yi-Ju Li, Xue-Jun Qin, Charles Kroner, Anya Green-Odlum, Hong Xu, Tian-Yuan Wang, Donald E Schmechel, Christine M Hulette, John Ervin and 4 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular neurosciences, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

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  11. Review
  12. Rare Variants and Transcriptomics in Alzheimer disease.Current genetic medicine reports · 2014
    Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Pu-Ting XuDepartment of Medicine and Center for Human Genetics, Duke University Medical Center, Durham, NC 27710, USA. pxu@chg.duhs.duke.edu
Yi-Ju Li
Xue-Jun Qin
Charles Kroner
Anya Green-Odlum
Hong Xu
Tian-Yuan Wang
Donald E Schmechel
Christine M Hulette
John Ervin
Mike Hauser
Jonathan Haines
Margaret A Pericak-Vance
John R Gilbert
Duke University · USCenter for Human Genetics · USDuke Medical Center · USDuke University Hospital · USVanderbilt University Medical Center · US

Funding

THE GENETICS OF PARKINSONISMP50NS039764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI VANCE, JEFFERY MARVIN · 1999 to 2010
$15.6M
USE OF DNA PROBE FOR CHOLINERGIC AND NON-CHOLINERGIC MG ANTIGENP01NS026630 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 1989 to 2009
$12.6M
TASTE AND SMELL MEASUREMENTS OF PATIENTS AT RISK FOR ALZHEIMER'S DISEASEP50AG005128 · NIA · DUKE UNIVERSITY · PI WELSH-BOHMER, KATHLEEN ANNE · 1985 to 2005
$11.2M
Genetic Studies of Dementia in the AmishR01AG019085 · NIA · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 2001 to 2011
$11.0M
Taste and smell enhancement in older cancer patientsP60AG011268 · NIA · DUKE UNIVERSITY · PI COHEN, HARVEY JAY · 1992 to 2005
$5.8M
An Integrated Genomic Approach to Alzheimer DiseaseR01AG019757 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 2002 to 2006
$4.8M
FUNCTIONAL MRI FOR EARLY DIAGNOSIS OF ALZHEIMER'SR01AG013308 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BOOKHEIMER, SUSAN Y · 1995 to 2011
$4.5M
GENOMIC SCREEN TO IDENTIFY ALZHEIMERS DISEASE GENESR01NS031153 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI VANCE, JEFFERY MARVIN · 1993 to 2007
$3.5M
SOFTWARE FOR INTEGRATED LINKAGE AND ASSOCIATION ANALYSISR01MH059528 · NIMH · DUKE UNIVERSITY · PI HAUSER, ELIZABETH R · 2000 to 2009
$2.5M
UCLA ALZHEIMERS DISEASE CENTERP30AG010123 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CUMMINGS, JEFFREY L. · 1991 to 1998
–
FUNCTIONAL BRAIN IMAGING AND MENTAL DISORDERS IN AGINGR01MH052453 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SMALL, GARY WILLIAM · 1995 to 1999
–
NIA NIH HHS AG05 128NIA NIH HHS AG10123NIA NIH HHS AG1 1268NIA NIH HHS AG13308NIA NIH HHS AG19085NIA NIH HHS P50 AG005128NIA NIH HHS P60 AG011268NIA NIH HHS R01 AG013308NIA NIH HHS R01 AG019085NIA NIH HHS R01 AG019757NIMH NIH HHS MH52453NIMH NIH HHS MH59528NIMH NIH HHS R01 MH052453NIMH NIH HHS R01 MH059528NINDS NIH HHS NS031 153NINDS NIH HHS NS26630NINDS NIH HHS NS31 153NINDS NIH HHS NS3 9764NINDS NIH HHS P01 NS026630NINDS NIH HHS P50 NS039764
6 · The paper itself

Abstract

APOE4 allele is a major risk factor for late-onset Alzheimer disease (AD). The mechanism of action of APOE in AD remains unclear. To study the effects of APOE alleles on gene expression in AD, we have analyzed the gene transcription patterns of human hippocampus from APOE3/3, APOE3/4, APOE4/4 AD patients and normal control using Serial Analysis of Gene Expression (SAGE). Using SAGE, we found gene expression patterns in hippocampus of APOE3/4 and APOE4/4 AD patients differ substantially from those of APOE3/3 AD patients. APOE3/4 and APOE4/4 allele expression may activate similar genes or gene pools with associated functions. APOE4 AD alleles activate multiple tumor suppressors, tumor inducers and negative regulator of cell growth or repressors that may lead to increased cell arrest, senescence and apoptosis. In contrast, there is decreased expression of large clusters of genes associated with synaptic plasticity, synaptic vesicle docking and fusing and axonal/neuronal outgrowth. In addition, reduction of neurotransmitter receptors and Ca2+ homeostasis, disruption of multiple signal transduction pathways, loss of cell protection, and perhaps most notably, mitochondrial oxidative phosphorylation/energy metabolism are associated with APOE3/4 and APOE4/4 AD alleles. These findings may help define the mechanisms that APOE4 contribute that increase risk for AD and identify new candidate genes conferring susceptibility to AD.

Indexed as

AgedAged, 80 and overAlzheimer DiseaseApolipoprotein E3Apolipoprotein E4DNA Mutational AnalysisDown-RegulationFemaleGene Expression ProfilingGene Expression RegulationGene FrequencyGene LibraryGenetic Predisposition to DiseaseGenetic TestingGenotypeHippocampusApolipoprotein E3Apolipoprotein E4Nerve Tissue Proteins

Identifiers

PMID17822919
PMCPMC3625967
OpenAlexW2052398791

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.