Evidence map›Paper›PMID 17805575›Full record

ArticleMolecular genetics and genomics : MGG2007

Characterization of two rice peroxidase promoters that respond to blast fungus-infection.

Katsutomo Sasaki, Ohtsu Yuichi, Susumu Hiraga, Yoko Gotoh, Shigemi Seo, Ichiro Mitsuhara, Hiroyuki Ito, Hirokazu Matsui, Yuko Ohashi

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In one paragraph

Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Katsutomo SasakiDivision of Plant Sciences, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
Ohtsu Yuichi
Susumu Hiraga
Yoko Gotoh
Shigemi Seo
Ichiro Mitsuhara
Hiroyuki Ito
Hirokazu Matsui
Yuko Ohashi
Hokkaido University · JPInstitute of Agrobiological Sciences · JPBio-oriented Technology Research Advancement Institution · JPNational Agriculture and Food Research Organization · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxidase (POX) genes consist of a large gene family possibly contributing to self-defense, however constitutive and stress-induced expression patterns of individual gene were poorly understood in rice. We studied here the characteristic expression of two representative rice POX genes, R2329 and R2184, which are blast fungus-inducible (Sasaki et al. in Plant Cell Physiol 45:1442-1452, 2004). Basal GUS activity in R2329 promoter::GUS rice plants was 100-fold higher than that in R2184 promoter::GUS plants, and these levels reflected the transcript levels monitored by quantitative real-time RT-PCR. R2329 promoter was activated by blast fungus-infection and wounding, and R2184 promoter was activated by the fungal-infection and methyl jasmonate (MeJA)-treatment. By histochemical GUS staining analysis, constitutive R2329 and R2184 expression was commonly found in vascular bundle and exodermis in leaves and roots, while the precise expression profile was characteristic. In blast fungus inoculated R2329 promoter::GUS leaves, GUS staining was induced just around fungus-induced local lesions. Analysis of the 5' deleted promoters suggests the presence of many kinds of stress-responsive elements in the regions between -1798 and -748 of R2329 promoter and between -1975 and -548 of R2184 promoter. These results revealed the stress-responsive characteristics of R2329 and R2184 promoters, and indicated the possible use for generation of useful transgenic plants.

Indexed as

Genes, PlantPromoter Regions, GeneticMycosesOrgan SpecificityOryzaPeroxidasesPlant DiseasesPlants, Genetically ModifiedReverse Transcriptase Polymerase Chain ReactionPeroxidases

Identifiers

PMID17805575
OpenAlexW2061694684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.