Evidence map›Paper›PMID 17805343›Full record

ArticleThe EMBO journal2007

The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning.

Man Mohan, Marek Bartkuhn, Martin Herold, Angela Philippen, Nina Heinl, Imke Bardenhagen, Joerg Leers, Robert A H White, Renate Renkawitz-Pohl, Harald Saumweber and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 182 citations in OpenAlex.

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  17. Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.International journal of molecular sciences · 2021
    Review
  18. Review
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59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Man MohanInstitute for Genetics, Justus-Liebig-University Giessen, Heinrich-Buff-Ring, Giessen, Germany.
Marek Bartkuhn
Martin Herold
Angela Philippen
Nina Heinl
Imke Bardenhagen
Joerg Leers
Robert A H White
Renate Renkawitz-Pohl
Harald Saumweber
Rainer Renkawitz
University of Giessen · DEHumboldt-Universität zu Berlin · DEPhilipps University of Marburg · DEUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Insulator sequences guide the function of distantly located enhancer elements to the appropriate target genes by blocking inappropriate interactions. In Drosophila, five different insulator binding proteins have been identified, Zw5, BEAF-32, GAGA factor, Su(Hw) and dCTCF. Only dCTCF has a known conserved counterpart in vertebrates. Here we find that the structurally related factors dCTCF and Su(Hw) have distinct binding targets. In contrast, the Su(Hw) interacting factor CP190 largely overlapped with dCTCF binding sites and interacts with dCTCF. Binding of dCTCF to targets requires CP190 in many cases, whereas others are independent of CP190. Analysis of the bithorax complex revealed that six of the borders between the parasegment specific regulatory domains are bound by dCTCF and by CP190 in vivo. dCTCF null mutations affect expression of Abdominal-B, cause pharate lethality and a homeotic phenotype. A short pulse of dCTCF expression during larval development rescues the dCTCF loss of function phenotype. Overall, we demonstrate the importance of dCTCF in fly development and in the regulation of abdominal segmentation.

Indexed as

AnimalsBody PatterningCCCTC-Binding FactorDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHomeodomain ProteinsInsulator ElementsLarvaMicrotubule-Associated ProteinsMutationNuclear ProteinsPhenotypeProtein BindingAbd-B proteins, DrosophilaCCCTC-Binding FactorCP190 protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsHomeodomain ProteinsMicrotubule-Associated ProteinsNuclear ProteinsRepressor Proteinssu(Hw) protein, Drosophila

Identifiers

PMID17805343
PMCPMC2230845
OpenAlexW2027781138

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.