Evidence map›Paper›PMID 17804507›Full record

ArticleJournal of virology2007

Differential expression of interferon (IFN) regulatory factors and IFN-stimulated genes at early times after West Nile virus infection of mouse embryo fibroblasts.

Svetlana V Scherbik, Bronislava M Stockman, Margo A Brinton

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 47 citations in OpenAlex.

  1. IncreasedViruses · 2022
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  6. Osteopontin ImpactsMediators of inflammation · 2017
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  14. Controlling complexity: the clinical relevance of mouse complex genetics.European journal of human genetics : EJHG · 2013
    Review
  15. Article
  16. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Svetlana V ScherbikDepartment of Biology, Georgia State University, Atlanta, GA 30302-4010, USA.
Bronislava M Stockman
Margo A Brinton
Georgia State University · US

Funding

Functional analysis of flavivirus genetic resistance.R01AI045135 · NIAID · GEORGIA STATE UNIVERSITY · PI BRINTON, MARGO A, KAUR, PARJIT · 2000 to 2018
$4.8M
NIAID NIH HHS AI 045135NIAID NIH HHS R01 AI045135
6 · The paper itself

Abstract

Although lineage I West Nile virus (WNV) strain Eg101 induced beta interferon (IFN-beta) production as early as 12 h after infection in primary mouse embryo fibroblasts and did not inhibit the JAK-STAT signaling pathway, it was still able to replicate efficiently. To gain insights about possible viral countermeasures used by this virus to suppress the host response, the cell transcriptional profile and the kinetics of IFN regulatory factor (IRF) expression and activation were examined at early times after infection. By 12 h after WNV infection, the majority of the up-regulated genes were ones involved in IFN pathways. However, comparison of IFN-stimulated gene (ISG) expression levels in mock-infected, IFN-treated, and virus-infected cells indicated that WNV infection suppressed the up-regulation of a subset of ISGs, including genes involved in transcriptional regulation, apoptosis, and stress responses, prior to 24 h after infection. Analysis of mRNA and protein levels for representative genes indicated that suppression was at the transcriptional and posttranscriptional levels. Translocation of IRF-3 to the nucleus was observed beginning at 8 h, IRF-7 expression was detected by 12 h, but IRF-1 expression was not detected until 24 h after infection. Virus-induced gene suppression was sufficient to overcome the effect of exogenous IFN pretreatment for 1 h but not for 4 h prior to infection. These data indicate that WNV can selectively counteract the host response at early times after infection by previously unreported mechanisms.

Indexed as

Gene Expression Regulation, ViralAnimalsFibroblastsInterferon Regulatory FactorsInterferonsKineticsMiceMice, Inbred C3HMicroscopy, ConfocalOligonucleotide Array Sequence AnalysisRNA, MessengerTime FactorsTranscription, GeneticWest Nile FeverWest Nile virusInterferon Regulatory FactorsInterferonsRNA, Messenger

Identifiers

PMID17804507
PMCPMC2168811
OpenAlexW2147354088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.