ReviewJournal of mathematical biology2008
Computational methods in noncoding RNA research.
Review in Journal of mathematical biology, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- Modeling ncRNA Synergistic Regulation in Cancer.Methods in molecular biology (Clifton, N.J.) · 2025Review
- CPPred: coding potential prediction based on the global description of RNA sequence.Nucleic acids research · 2019Article
- StructRNAfinder: an automated pipeline and web server for RNA families prediction.BMC bioinformatics · 2018Article
- Predicting RNA Structure with Vfold.Methods in molecular biology (Clifton, N.J.) · 2017Article
- A Review on Recent Computational Methods for Predicting Noncoding RNAs.BioMed research international · 2017Review
- SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification.BMC bioinformatics · 2016Article
- RNA motif discovery: a computational overview.Biology direct · 2015Review
- A Method to Predict the 3D Structure of an RNA Scaffold.Methods in molecular biology (Clifton, N.J.) · 2015Article
- Regulatory RNAs: charming gene management styles for synthetic biology applications.RNA biology · 2013Review
- Widespread purifying selection on RNA structure in mammals.Nucleic acids research · 2013Article
- Review
- Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.BMC bioinformatics · 2012Article
- Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical Implications.Genetics research international · 2012Article
- RAG: an update to the RNA-As-Graphs resource.BMC bioinformatics · 2011Article
- Small RNAs in the genus Clostridium.mBio · 2011Article
- FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.Nature methods · 2010Article
- Non-coding RNA in apicomplexan parasites.Molecular and biochemical parasitology · 2010Review
- A framework for automated enrichment of functionally significant inverted repeats in whole genomes.BMC bioinformatics · 2010Article
- Non-coding RNA detection methods combined to improve usability, reproducibility and precision.BMC bioinformatics · 2010Article
- Computational approaches to 3D modeling of RNA.Journal of physics. Condensed matter : an Institute of Physics journal · 2010Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Non protein-coding RNAs (ncRNAs) are a research hotspot in bioinformatics. Recent discoveries have revealed new ncRNA families performing a variety of roles, from gene expression regulation to catalytic activities. It is also believed that other families are still to be unveiled. Computational methods developed for protein coding genes often fail when searching for ncRNAs. Noncoding RNAs functionality is often heavily dependent on their secondary structure, which makes gene discovery very different from protein coding RNA genes. This motivated the development of specific methods for ncRNA research. This article reviews the main approaches used to identify ncRNAs and predict secondary structure.
Indexed as
Identifiers
17786447What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.