Evidence map›Paper›PMID 17767937›Full record

ArticleAtherosclerosis2008

A pleiotropic QTL on 2p influences serum Lp-PLA2 activity and LDL cholesterol concentration in a baboon model for the genetics of atherosclerosis risk factors.

A Vinson, M C Mahaney, L A Cox, J Rogers, J L VandeBerg, D L Rainwater

Abstract read
In one paragraph

Article in Atherosclerosis, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A VinsonDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX 78245, United States. avinson@sfbrgenetics.org
M C Mahaney
L A Cox
J Rogers
J L VandeBerg
D L Rainwater
Texas Biomedical Research Institute · US

Funding

WNV REPLIVAX VACCINE IN NON-HUMAN PRIMATESP51RR013986 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI GOLDBERG, ERWIN · 1999 to 2011
$79.1M
VETERINARY SERVICES--COREP01HL028972 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI VANDEBERG, JOHN L · 1985 to 2012
$42.0M
GENETIC MODIFIERS OF SEVERITY IN SICKLE CELL ANEMIAR01HL068922 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI PLATT, ORAH S · 2001 to 2005
$3.6M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR017515 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 2003 to 2003
$3.1M
MOLECULAR GENETIC MARKERS IN PRIMATE DISEASE MODELSR01RR008781 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI ROGERS, JEFFREY A · 1999 to 2005
$1.7M
EXTRAMURAL RES FACILITIES CONSTRC06RR015456 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI VANDEBERG, JOHN L · 2001 to 2001
$1.1M
MOLECULAR GENETIC MARKERS IN PRIMATE DISEASE MODELSR29RR008781 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI ROGERS, JEFFREY A · 1993 to 1998
–
BABOON F-CAGE FACILITY FOR PRIMATE RESEARCH CENTERC06RR014578 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI VANDEBERG, JOHN L · 1999 to 1999
–
MOLECULAR AND BIOCHEMICAL GENETICS LABORATORY RENOVATIONC06RR013556 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 1998 to 1998
–
NCRR NIH HHS C06 RR013556NCRR NIH HHS C06 RR014578NCRR NIH HHS C06 RR015456NCRR NIH HHS C06 RR017515NCRR NIH HHS C06 RR13556NCRR NIH HHS C06 RR15456NCRR NIH HHS P51 RR013986NCRR NIH HHS R01 RR008781NCRR NIH HHS R24 RR008781NHLBI NIH HHS P01 HL028972NHLBI NIH HHS R01 HL068922
6 · The paper itself

Abstract

Lipoprotein-associated phospholipase A(2) (Lp-PLA(2)), the major portion of which is bound to low-density lipoprotein, is an independent biomarker of cardiovascular disease risk. To search for common genetic determinants of variation in both Lp-PLA(2) activity and LDL cholesterol (LDL-C) concentration, we assayed these substances in serum from 679 pedigreed baboons. Using a maximum likelihood-based variance components approach, we detected significant evidence for a QTL affecting Lp-PLA(2) activity (LOD=2.79, genome-wide P=0.039) and suggestive evidence for a QTL affecting LDL-C levels (LOD=2.16) at the same location on the baboon ortholog of human chromosome 2p. Because we also found a significant genetic correlation between the two traits (rho(G)=0.50, P<0.00001), we conducted bivariate linkage analyses of Lp-PLA(2) activity and LDL-C concentration. These bivariate analyses improved the evidence (LOD=3.19, genome-wide P=0.015) for a QTL at the same location on 2p, corresponding to the human cytogenetic region 2p24.3-p23.2. The QTL-specific correlation between the traits (rho(Q)=0.62) was significantly different from both zero and 1 (P[rho(Q)=0]=0.047; P[rho(Q)=1]=0.022), rejecting the hypothesis of co-incident linkage and consistent with incomplete pleiotropy at this locus. We conclude that polymorphisms at the QTL described in this study exert some genetic effects that are shared between Lp-PLA(2) activity and LDL-C concentration.

Indexed as

1-Alkyl-2-acetylglycerophosphocholine EsteraseAnimalsAtherosclerosisCholesterol, LDLDisease Models, AnimalFemaleMaleMultivariate AnalysisPapio hamadryasQuantitative Trait LociRisk Factors1-Alkyl-2-acetylglycerophosphocholine EsteraseCholesterol, LDL

Identifiers

PMID17767937
PMCPMC2289511
OpenAlexW1968753781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.