Evidence map›Paper›PMID 17767372›Full record

ArticleJournal of human genetics2007

Oculocutaneous albinism type 2 (OCA2) with homozygous 2.7-kb deletion of the P gene and sickle cell disease in a Cameroonian family. Identification of a common TAG haplotype in the mutated P gene.

Robert Aquaron, Nadem Soufir, Jean-Louis Bergé-Lefranc, Catherine Badens, Frederic Austerlitz, Bernard Grandchamp

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Article in Journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Robert AquaronLaboratoire de Biochimie et Biologie Moléculaire, Faculté de Médecine, Université de la Méditerranée Aix-Marseille II, 27 Boulevard Jean Moulin, 13385, Marseille, Cedex 5, France. robert.aquaron@medecine.univ-mrs.fr.
Nadem SoufirBiochimie hormonale et Génétique, AP-HP, Hôpital Bichat-Claude Bernard, Paris, France.
Jean-Louis Bergé-LefrancLaboratoire de Biochimie et Biologie Moléculaire, Hôpital de la Conception, Marseille, France.
Catherine BadensFaculté de Médecine, Centre d'Enseignement et de Recherche en Génétique Médicale, Marseille, France.
Frederic AusterlitzLaboratoire Ecologie, Systématique et Evolution, UMR CNRS/UPS/ENGREF 8079, Université Paris Sud, Orsay, France.
Bernard GrandchampBiochimie hormonale et Génétique, AP-HP, Hôpital Bichat-Claude Bernard, Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we report on a Cameroonian family from the Ewondo ethnic group, presenting with three oculocutaneous albinism type 2 (OCA2) patients homozygous for the 2.7-kb deletion of the P gene. In one of these patients OCA2 was associated with sickle cell anaemia and in two with the sickle cell trait. We took this opportunity to determine single nucleotide polymorphism (SNP) haplotypes within the P gene in this family in comparison with a group of 53 OCA2 patients homozygous for the same mutation and with a matched unrelated full-coloured control group of 49 subjects, originating from seven different ethnic groups of Southern Cameroon including Ewondo. A combination of five exonic and intronic SNPs in the OCA2 gene was genotyped by sequencing PCR products. We found 3 different haplotypes (TAGCT, TAGTT and TAGCC with frequencies of 0.66, 0.28 and 0.06, respectively) associated with the mutation in the 53 OCA2 patients, while 11 different haplotypes were observed in the control group. These observations suggest that the mutation appeared on the relatively frequent haplotype TAGCT, and that the two other haplotypes are derived from two independent recombination events. These haplotypic data, associated with a value of 1/15,000 for the prevalence of the 2.7-kb mutation, a present effective population size of 10,000,000 for Cameroon and a recombination rate of 0.0031, allowed us to estimate that this mutation originated 4,100-5,645 years ago.

Indexed as

Gene DeletionHaplotypesMutationAlbinism, OculocutaneousAnemia, Sickle CellCameroonCase-Control StudiesFemaleGenotypeGlobinsHomozygoteHumansMembrane Transport ProteinsPedigreePolymorphism, Single NucleotideGlobinsMembrane Transport ProteinsOCA2 protein, human

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.