Evidence map›Paper›PMID 17764558›Full record

ArticleBMC microbiology2007

Global analysis of host response to induction of a latent bacteriophage.

Robin E Osterhout, Israel A Figueroa, Jay D Keasling, Adam P Arkin

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.9field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  6. Soil viral diversity, ecology and climate change.Nature reviews. Microbiology · 2023
    Review
  7. Mechanisms regulating the CRISPR-Cas systems.Frontiers in microbiology · 2023
    Review
  8. Article
  9. Review
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Reconstruction and Application of Protein-Protein Interaction Network.International journal of molecular sciences · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Robin E OsterhoutDepartment of Bioengineering and Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720, USA. reosterhout@berkeley.edu
Israel A Figueroa
Jay D Keasling
Adam P Arkin
Lawrence Berkeley National Laboratory · USHoward Hughes Medical Institute · USUniversity of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe transition from viral latency to lytic growth involves complex interactions among host and viral factors, and the extent to which host physiology is buffered from the virus during induction of lysis is not known. A reasonable hypothesis is that the virus should be evolutionarily selected to ensure host health throughout induction to minimize its chance of reproductive failure. To address this question, we collected transcriptional profiles of Escherichia coli and bacteriophage lambda throughout lysogenic induction by UV light.

resultsWe observed a temporally coordinated program of phage gene expression, with distinct early, middle and late transcriptional classes. Our study confirmed known host-phage interactions of induction of the heat shock regulon, escape replication, and suppression of genes involved in cell division and initiation of replication. We identified 728 E. coli genes responsive to prophage induction, which included pleiotropic stress response pathways, the Arc and Cpx regulons, and global regulators crp and lrp. Several hundred genes involved in central metabolism, energy metabolism, translation and transport were down-regulated late in induction. Though statistically significant, most of the changes in these genes were mild, with only 140 genes showing greater than two-fold change.

conclusionOverall, we observe that prophage induction has a surprisingly low impact on host physiology. This study provides the first global dynamic picture of how host processes respond to lambda phage induction.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialGene Expression Regulation, ViralBacteriophage lambdaEscherichia coliMolecular Sequence DataProphagesTime FactorsUltraviolet RaysVirus Activation

Identifiers

PMID17764558
PMCPMC2147009
OpenAlexW2000100985

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.