Evidence map›Paper›PMID 17761676›Full record

ArticleThe Journal of biological chemistry2007

Regulation of IRF-3-dependent innate immunity by the papain-like protease domain of the severe acute respiratory syndrome coronavirus.

Santhana G Devaraj, Nan Wang, Zhongbin Chen, Zihong Chen, Monica Tseng, Naina Barretto, Rongtuan Lin, Clarence J Peters, Chien-Te K Tseng, Susan C Baker and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 271 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
271citing papers in PubMed, 2 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

271 citing papers in PubMed, 2 syntheses or guidelines pooled it, 418 citations in OpenAlex.

  1. Pooled it
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  12. Flavonoids Derived from the Roots ofPlants (Basel, Switzerland) · 2024
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  13. SARS-CoV-2 PLChemistryOpen · 2024
    Article
  14. Profiling of coronaviral MProtein science : a publication of the Protein Society · 2024
    Article
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211 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Santhana G DevarajDepartment of Microbiology and Immunology, Center of Biodefense and Emerging Infectious Diseases, Institute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX 77555-1019, USA.
Nan Wang
Zhongbin Chen
Zihong Chen
Monica Tseng
Naina Barretto
Rongtuan Lin
Clarence J Peters
Chien-Te K Tseng
Susan C Baker
Kui Li
Galveston College · USUniversity of Chicago · USJewish General Hospital · CALoyola University Chicago · USThe University of Texas Medical Branch at Galveston · US

Funding

WRCE Nonhuman Primate CoreU54AI057156 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI WALKER, DAVID H · 2003 to 2013
$102.6M
Protein Expression and PurificationP01AI060915 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI JOHNSON, MICHAEL E. · 2005 to 2009
$7.7M
Role of TLR3 Signaling in Control of HCVR01AI069285 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI LI, KUI · 2007 to 2016
$2.5M
STRUCTURE AND FUNCTION OF THE CORONAVIRUS REPLICASER01AI045798 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI BAKER, SUSAN C. · 2001 to 2005
$1.5M
Impact of HCV NS3/4A Protease on Host Innate ImmunityR21DA018054 · NIDA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI LI, KUI · 2003 to 2004
$302k
Role of TLR3 Signaling in Control of HCVR56AI069285 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI LI, KUI · 2012 to 2012
$300k
VIRAL RESPIRATORY PATHOGENS RESEARCH UNIT /VRPRU/-266030039-266030039N01AI030039 · NIAID · BAYLOR COLLEGE OF MEDICINE INC · PI COUCH, ROBERT B. · 2003 to 2006
–
NIAID NIH HHS AI057156NIAID NIH HHS AI060915NIAID NIH HHS AI069285NIAID NIH HHS AI30039NIAID NIH HHS AI45798NIAID NIH HHS N01 AI030039NIAID NIH HHS P01 AI060915NIAID NIH HHS R01 AI045798NIAID NIH HHS R01 AI069285NIAID NIH HHS U54 AI057156NIDA NIH HHS DA018054NIDA NIH HHS R21 DA018054
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus (SARS-CoV) is a novel coronavirus that causes a highly contagious respiratory disease, SARS, with significant mortality. Although factors contributing to the highly pathogenic nature of SARS-CoV remain poorly understood, it has been reported that SARS-CoV infection does not induce type I interferons (IFNs) in cell culture. However, it is uncertain whether SARS-CoV evades host detection or has evolved mechanisms to counteract innate host defenses. We show here that infection of SARS-CoV triggers a weak IFN response in cultured human lung/bronchial epithelial cells without inducing the phosphorylation of IFN-regulatory factor 3 (IRF-3), a latent cellular transcription factor that is pivotal for type I IFN synthesis. Furthermore, SARS-CoV infection blocked the induction of IFN antiviral activity and the up-regulation of protein expression of a subset of IFN-stimulated genes triggered by double-stranded RNA or an unrelated paramyxovirus. In searching for a SARS-CoV protein capable of counteracting innate immunity, we identified the papain-like protease (PLpro) domain as a potent IFN antagonist. The inhibition of the IFN response does not require the protease activity of PLpro. Rather, PLpro interacts with IRF-3 and inhibits the phosphorylation and nuclear translocation of IRF-3, thereby disrupting the activation of type I IFN responses through either Toll-like receptor 3 or retinoic acid-inducible gene I/melanoma differentiation-associated gene 5 pathways. Our data suggest that regulation of IRF-3-dependent innate antiviral defenses by PLpro may contribute to the establishment of SARS-CoV infection.

Indexed as

Immunity, InnateAnimalsBronchiCell LineHumansInterferon Regulatory Factor-3Interferon Type IPeptide HydrolasesProtein Structure, TertiarySevere Acute Respiratory SyndromeSevere acute respiratory syndrome-related coronavirusViral ProteinsInterferon Regulatory Factor-3Interferon Type IPeptide HydrolasesViral Proteins

Identifiers

PMID17761676
PMCPMC2756044
OpenAlexW190626844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.