ArticleBMC bioinformatics2007
antiCODE: a natural sense-antisense transcripts database.
Article in BMC bioinformatics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 30 citations in OpenAlex.
- OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes.Nucleic acids research · 2018Article
- Long non-coding RNAs and complex diseases: from experimental results to computational models.Briefings in bioinformatics · 2017Review
- The Evolution and Expression Pattern of Human Overlapping lncRNA and Protein-coding Gene Pairs.Scientific reports · 2017Article
- Computational Approaches for Revealing the Structure of Membrane Transporters: Case Study on Bilitranslocase.Computational and structural biotechnology journal · 2017Review
- NONCODE 2016: an informative and valuable data source of long non-coding RNAs.Nucleic acids research · 2016Article
- Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis.Genome research · 2014Article
- Long non-coding RNAs and complex human diseases.International journal of molecular sciences · 2013Review
- Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features.BMC genomics · 2012Article
- Transcriptional regulation of translocator protein (Tspo) via a SINE B2-mediated natural antisense transcript in MA-10 Leydig cells.Biology of reproduction · 2012Article
- RNAi screen indicates widespread biological function for human natural antisense transcripts.PloS one · 2010Article
- Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues.BMC genomics · 2009Article
- Mapping of small RNAs in the human ENCODE regions.American journal of human genetics · 2008Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundNatural antisense transcripts (NATs) are endogenous RNA molecules that exhibit partial or complete complementarity to other RNAs, and that may contribute to the regulation of molecular functions at various levels. In recent years, large-scale NAT screens in several model organisms have produced much data, but there is no database to assemble all these data. AntiCODE intends to function as an integrated NAT database for this purpose.
resultsThis release of antiCODE contains more than 30,000 non-redundant natural sense-antisense transcript pairs from 12 eukaryotic model organisms. In order to provide an integrated NAT research platform, efficient browser, search and Blast functions have been included to enable users to easily access information through parameters such as species, accession number, overlapping patterns, coding potential etc. In addition to the collected information, antiCODE also introduces a simple classification system to facilitate the study of natural antisense transcripts.
conclusionThough a few similar databases also dealing with NATs have appeared lately, antiCODE is the most comprehensive among these, comprising almost all currently detected NAT pairs.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.