Evidence map›Paper›PMID 17727708›Full record

ArticleBMC evolutionary biology2007

Thyroid hormone receptor orthologues from invertebrate species with emphasis on Schistosoma mansoni.

Wenjie Wu, Edward G Niles, Philip T LoVerde

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Nuclear hormone receptors in parasitic Platyhelminths.Molecular and biochemical parasitology · 2019
    Review
  8. Article
  9. Evolutionarily conserved TRH neuropeptide pathway regulates growth inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  10. PeerJ · 2017
    Article
  11. Article
  12. Article
  13. Big data and other challenges in the quest for orthologs.Bioinformatics (Oxford, England) · 2014
    Article
  14. Article
  15. Review
  16. Article
  17. Nuclear hormone receptors in parasitic helminths.Molecular and cellular endocrinology · 2011
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Wenjie WuDepartment of Microbiology and Immunology, School of Medicine and Biomedical Science, State University of New York, Buffalo, NY 14214, USA. w_wenjie@hotmail.com
Edward G Niles
Philip T LoVerde
University at Buffalo, State University of New York · USTexas Biomedical Research Institute · US

Funding

SIGNAL TRANSDUCTION IN SCHISTOSOMESR01AI046762 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LOVERDE, PHILIP T · 2000 to 2004
$1.8M
Training to Enhance Schistosomiasis Research in BrazilD43TW006580 · FIC · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI LOVERDE, PHILIP T · 2003 to 2007
$726k
FIC NIH HHS D43 TW006580FIC NIH HHS D43TW006580NIAID NIH HHS AI046762NIAID NIH HHS R01 AI046762
6 · The paper itself

Abstract

backgroundThyroid hormone receptors (TRs) function as molecular switches in response to thyroid hormone to regulate gene transcription. TRs were previously believed to be present only in chordates.

resultsWe isolated two TR genes from the Schistosoma mansoni and identified TR orthologues from other invertebrates: the platyhelminths, S. japonium and Schmidtea mediterranea, the mollusc, Lottia gigantean and the arthropod Daphnia pulex. Phylogenetic analysis of the DNA binding domain and/or ligand binding domain shows that invertebrate and vertebrate TRs cluster together, TRs from the vertebrates and from the jawless vertebrate (lamprey) clustered within separate subgroups, Platyhelminth TRs cluster outside of the vertebrate TR subgroups and that the schistosome TRs and S. mediterranea TRs clustered within separate subgroups. Alignment of the C-terminus of the A/B domain revealed a conserved TR-specific motif, termed TR 'N-terminus signature sequence', with a consensus sequence of (G/P)YIPSY(M/L)XXXGPE(D/E)X. Heterodimer formation between S. mansoni TRs and SmRXR1 suggests that the invertebrate TR protein gained the ability to form a heterodimer with RXR. ESMA analysis showed that SmTR alpha could bind to a conserved DNA core motif as a monomer or homodimer.

conclusionVertebrate TR genes originated from a common ancestor of the Bilateria. TR genes underwent duplication independently in the Protostomia and Deuterostomia. The duplication of TRs in deuterostomes occurred after the split of jawless and jawed vertebrates. In protostomes, TR genes underwent duplication in Platyhelminths, occurring independently in trematode and turbellarian lineages. Using S. mansoni TRs as an example, invertebrate TRs exhibited the ability to form a dimer with RXR prior to the emergence of the vertebrate TRs and were able to bind to vertebrate TR core DNA elements as a monomer or homodimer.

Indexed as

Gene Expression RegulationGenes, HelminthAmino Acid SequenceAnimalsBase SequenceChromosomes, Artificial, BacterialConserved SequenceDNA-Binding ProteinsElectrophoretic Mobility Shift AssayEvolution, MolecularInvertebratesLikelihood FunctionsPhylogenyReceptors, Thyroid HormoneSchistosoma mansoniSequence AlignmentDNA-Binding ProteinsReceptors, Thyroid Hormone

Identifiers

PMID17727708
PMCPMC2045677
OpenAlexW2047590433

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.