Evidence map›Paper›PMID 17724082›Full record

ArticleMolecular and cellular biology2007

Structural changes in Mcm5 protein bypass Cdc7-Dbf4 function and reduce replication origin efficiency in Saccharomyces cerevisiae.

Margaret L Hoang, Ronald P Leon, Luis Pessoa-Brandao, Sonia Hunt, M K Raghuraman, Walton L Fangman, Bonita J Brewer, Robert A Sclafani

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. Article
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  8. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Dbf4: the whole is greater than the sum of its parts.Cell cycle (Georgetown, Tex.) · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Margaret L HoangDepartment of Genome Sciences, University of Washington, Seattle, USA.
Ronald P Leon
Luis Pessoa-Brandao
Sonia Hunt
M K Raghuraman
Walton L Fangman
Bonita J Brewer
Robert A Sclafani
University of Washington · USUniversity of Colorado Denver · US

Funding

EUKARYOTIC CHROMOSOME STRUCTURE AND REPLICATIONR01GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI BREWER, BONITA J · 1985 to 2016
$6.8M
GENETIC &MOLECULAR ANALYSIS OF YEAST DNA REPLICATIONR01GM035078 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI SCLAFANI, ROBERT A · 1985 to 2012
$3.4M
EUKARYOTIC CHROMOSOME REPLICATIONR37GM018926 · NIGMS · UNIVERSITY OF WASHINGTON · PI FANGMAN, WALTON L · 1995 to 2004
$2.6M
Analyzing the roles of Cdc7 and Mcm5 in DNA replicationF31GM070403 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI LEON, RONALD P · 2003 to 2006
$99k
RESEARCH TRAINING IN BIOMEDICAL SCIENCESF31GM018926 · NIGMS · MAYO CLINIC COLL OF MEDICINE, ROCHESTER · PI RODRIGUES, PAULA D · 1997 to 2001
$46k
NIGMS NIH HHS F31 GM018926NIGMS NIH HHS F31 GM070403NIGMS NIH HHS GM070403NIGMS NIH HHS GM18926NIGMS NIH HHS GM35078NIGMS NIH HHS R01 GM018926NIGMS NIH HHS R01 GM035078NIGMS NIH HHS R37 GM018926
6 · The paper itself

Abstract

Eukaryotic chromosomal replication is a complicated process with many origins firing at different efficiencies and times during S phase. Prereplication complexes are assembled on all origins in G(1) phase, and yet only a subset of complexes is activated during S phase by DDK (for Dbf4-dependent kinase) (Cdc7-Dbf4). The yeast mcm5-bob1 (P83L) mutation bypasses DDK but results in reduced intrinsic firing efficiency at 11 endogenous origins and at origins located on minichromosomes. Origin efficiency may result from Mcm5 protein assuming an altered conformation, as predicted from the atomic structure of an archaeal MCM (for minichromosome maintenance) homologue. Similarly, an intragenic mutation in a residue predicted to interact with P83L suppresses the mcm5-bob1 bypass phenotype. We propose DDK phosphorylation of the MCM complex normally results in a single, highly active conformation of Mcm5, whereas the mcm5-bob1 mutation produces a number of conformations, only one of which is permissive for origin activation. Random adoption of these alternate states by the mcm5-bob1 protein can explain both how origin firing occurs independently of DDK and why origin efficiency is reduced. Because similar mutations in mcm2 and mcm4 cannot bypass DDK, Mcm5 protein may be a unique Mcm protein that is the final target of DDK regulation.

Indexed as

DNA ReplicationReplication OriginCell Cycle ProteinsChromosomal Proteins, Non-HistoneChromosomes, FungalDNA-Binding ProteinsDNA, FungalElectrophoresis, Gel, Two-DimensionalFungal ProteinsMinichromosome Maintenance Complex Component 4MutationPlasmidsProtein Serine-Threonine KinasesProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCDC7 protein, S cerevisiaeCell Cycle ProteinsChromosomal Proteins, Non-HistoneDbf4 protein, S cerevisiaeDNA-Binding ProteinsDNA, FungalFungal ProteinsMCM2 protein, S cerevisiaeMCM4 protein, S cerevisiaeMCM5 protein, S cerevisiaeMinichromosome Maintenance Complex Component 4Protein Serine-Threonine KinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID17724082
PMCPMC2169039
OpenAlexW2170400990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.