Evidence map›Paper›PMID 17721994›Full record

ArticleInternational journal of cancer2007

Genetic and functional analysis of CHEK2 (CHK2) variants in multiethnic cohorts.

Daphne W Bell, Sang H Kim, Andrew K Godwin, Taryn A Schiripo, Patricia L Harris, Sara M Haserlat, Doke C R Wahrer, Christopher A Haiman, Mary B Daly, Kristin B Niendorf and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 2 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 2 syntheses or guidelines pooled it, 90 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  9. Cancers · 2023
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  15. Cells · 2020
    Review
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  18. Article
  19. The impact of variant classification on the clinical management of hereditary cancer syndromes.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 1 country.

Daphne W BellMassachusetts General Hospital Cancer Center, Charlestown, MA, USA. belldaph@mail.nih.gov
Sang H Kim
Andrew K Godwin
Taryn A Schiripo
Patricia L Harris
Sara M Haserlat
Doke C R Wahrer
Christopher A Haiman
Mary B Daly
Kristin B Niendorf
Matthew R Smith
Dennis C Sgroi
Judy E Garber
Olufunmilayo I Olopade
Loic Le Marchand
Brian E Henderson
David Altshuler
Daniel A Haber
Matthew L Freedman
Massachusetts General Hospital · USHarvard University · USFox Chase Cancer Center · USUniversity of Southern California · USCancer Research Center · USDana-Farber Cancer Institute · USUniversity of Chicago Medical Center · USZero to Three · US

Funding

GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSR01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2001 to 2005
$23.2M
Midcareer Investigator AwardK24CA121990 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI SMITH, MATTHEW RAYMOND · 2007 to 2016
$1.9M
GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSU01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 1996 to 2000
$943k
MUTATIONAL ANALYSIS OF P53 RELATED GENESR21CA087691 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI HABER, DANIEL A. · 2000 to 2001
$257k
Intramural NIH HHSNCI NIH HHS CA63464NCI NIH HHS CA87691NCI NIH HHS K24 CA121990NCI NIH HHS R01 CA063464NCI NIH HHS U01 CA063464
6 · The paper itself

Abstract

The CHEK2-1100delC mutation is recurrent in the population and is a moderate risk factor for breast cancer. To identify additional CHEK2 mutations potentially contributing to breast cancer susceptibility, we sequenced 248 cases with early-onset disease; functionally characterized new variants and conducted a population-based case-control analysis to evaluate their contribution to breast cancer risk. We identified 1 additional null mutation and 5 missense variants in the germline of cancer patients. In vitro, the CHEK2-H143Y variant resulted in gross protein destabilization, while others had variable suppression of in vitro kinase activity using BRCA1 as a substrate. The germline CHEK2-1100delC mutation was present among 8/1,646 (0.5%) sporadic, 2/400 (0.5%) early-onset and 3/302 (1%) familial breast cancer cases, but undetectable amongst 2,105 multiethnic controls, including 633 from the US. CHEK2-positive breast cancer families also carried a deleterious BRCA1 mutation. 1100delC appears to be the only recurrent CHEK2 mutation associated with a potentially significant contribution to breast cancer risk in the general population. Another recurrent mutation with attenuated in vitro function, CHEK2-P85L, is not associated with increased breast cancer susceptibility, but exhibits a striking difference in frequency across populations with different ancestral histories. These observations illustrate the importance of genotyping ethnically diverse groups when assessing the impact of low-penetrance susceptibility alleles on population risk. Our findings highlight the notion that clinical testing for rare missense mutations within CHEK2 may have limited value in predicting breast cancer risk, but that testing for the 1100delC variant may be valuable in phenotypically- and geographically-selected populations.

Indexed as

MutationAdultAgedAge of OnsetAsian PeopleBlack or African AmericanBreast NeoplasmsCase-Control StudiesCheckpoint Kinase 2DNA, ComplementaryDNA Mutational AnalysisFemaleGene FrequencyGenetic Predisposition to DiseaseGerm-Line MutationHawaiiCheckpoint Kinase 2CHEK2 protein, humanDNA, ComplementaryHistidineIsoleucineLeucineProlineProtein Serine-Threonine KinasesThreonineTyrosine

Identifiers

PMID17721994
PMCPMC3090684
OpenAlexW2063588256

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.