Evidence map›Paper›PMID 17720827›Full record

ArticleApplied and environmental microbiology2007

Microarray-based characterization of the Listeria monocytogenes cold regulon in log- and stationary-phase cells.

Yvonne C Chan, Sarita Raengpradub, Kathryn J Boor, Martin Wiedmann

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed.

  1. Bioprotective Strategies to ControlInternational journal of molecular sciences · 2025
    Review
  2. Microorganisms · 2025
    Review
  3. Review
  4. Role of cold shock proteins B and D inInfection and immunity · 2024
    Article
  5. Review
  6. Stress Adaptation Responses of aFoods (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Article
  9. Genomic Analysis of Two Representative Strains ofFoods (Basel, Switzerland) · 2022
    Article
  10. Article
  11. Frontiers in microbiology · 2022
    Review
  12. Article
  13. Microorganisms · 2021
    Review
  14. Adaptive Response ofFrontiers in microbiology · 2021
    Review
  15. Dual Transcriptional Profile ofPathogens (Basel, Switzerland) · 2019
    Article
  16. Frontiers in nutrition · 2019
    Article
  17. Resistance ofFrontiers in microbiology · 2018
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yvonne C ChanDepartment of Food Science, Cornell University, Ithica, NY 14853, USA. mw16@cornell.edu
Sarita Raengpradub
Kathryn J Boor
Martin Wiedmann

Funding

Sigma B and stress response in Listeria monocytogenesR01AI052151 · NIAID · CORNELL UNIVERSITY ITHACA · PI BOOR, KATHRYN J · 2003 to 2012
$2.7M
NIAID NIH HHS R01 AI052151NIAID NIH HHS R01 AI052151-01A1
6 · The paper itself

Abstract

Whole-genome microarray experiments were performed to define the Listeria monocytogenes cold growth regulon and to identify genes differentially expressed during growth at 4 and 37 degrees C. Microarray analysis using a stringent cutoff (adjusted P < 0.001; >/=2.0-fold change) revealed 105 and 170 genes that showed higher transcript levels in logarithmic- and stationary-phase cells, respectively, at 4 degrees C than in cells grown at 37 degrees C. A total of 74 and 102 genes showed lower transcript levels in logarithmic- and stationary-phase cells, respectively, grown at 4 degrees C. Genes with higher transcript levels at 4 degrees C in both stationary- and log-phase cells included genes encoding a two-component response regulator (lmo0287), a cold shock protein (cspL), and two RNA helicases (lmo0866 and lmo1722), whereas a number of genes encoding virulence factors and heat shock proteins showed lower transcript levels at 4 degrees C. Selected genes that showed higher transcript levels at 4 degrees C during both stationary and log phases were confirmed by quantitative reverse transcriptase PCR. Our data show that (i) a large number of L. monocytogenes genes are differentially expressed at 4 and 37 degrees C, with more genes showing higher transcript levels than lower transcript levels at 4 degrees C, (ii) L. monocytogenes genes with higher transcript levels at 4 degrees C include a number of genes and operons with previously reported or plausible roles in cold adaptation, and (iii) L. monocytogenes genes with lower transcript levels at 4 degrees C include a number of virulence and virulence-associated genes as well as some heat shock genes.

Indexed as

Cold TemperatureGene Expression Regulation, BacterialRegulonBacterial ProteinsColony Count, MicrobialGenome, BacterialHeat-Shock ResponseListeria monocytogenesOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionBacterial Proteins

Identifiers

PMID17720827
PMCPMC2075049

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.