Evidence map›Paper›PMID 17720781›Full record

ArticleJournal of bacteriology2007

Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.

M M Vickerman, S Iobst, A M Jesionowski, S R Gill

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  4. Effects of glucose and lactate onMicrobiology spectrum · 2024
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  5. Review
  6. Investigating theMicrobiology (Reading, England) · 2022
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  7. Article
  8. Article
  9. Article
  10. Article
  11. Competence inFrontiers in cellular and infection microbiology · 2019
    Review
  12. Genetics ofMicrobiology spectrum · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M M VickermanDepartment of Periodontics and Endodontics, University at Buffalo School of Dentistry, 223 Foster Hall, 3435 Main St., Buffalo, NY 14214, USA. mmv4@buffalo.edu
S Iobst
A M Jesionowski
S R Gill
University at Buffalo, State University of New York · US

Funding

REGULATION OF STREPTOCOCCUS GORDONII GLUCOSYLTRANSFERASER01DE011090 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI VICKERMAN, M MARGARET · 2000 to 2004
$1.5M
REGULATION OF STREPTOCOCCUS GORDONII GLUCOSYLTRANSFERASER29DE011090 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VICKERMAN, M MARGARET · 1995 to 1999
–
REGULATION OF STREPTOCOCCUS GORDONII GLUCOSYLTRANSFERASER55DE011090 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VICKERMAN, M MARGARET · 1994 to 1994
–
NIDCR NIH HHS DE11090NIDCR NIH HHS R01 DE011090NIDCR NIH HHS R29 DE011090
6 · The paper itself

Abstract

Streptococcus gordonii is a primary colonizer of the multispecies biofilm on tooth surfaces forming dental plaque and a potential agent of endocarditis. The recent completion of the genome sequence of the naturally competent strain Challis allowed the design of a spotted oligonucleotide microarray to examine a genome-wide response of this organism to environmental stimuli such as signal peptides. Based on temporal responses to synthetic competence signaling peptide (CSP) as indicated by transformation frequencies, the S. gordonii transcriptome was analyzed at various time points after CSP exposure. Microarray analysis identified 35 candidate early genes and 127 candidate late genes that were up-regulated at 5 and 15 min, respectively; these genes were often grouped in clusters. Results supported published findings on S. gordonii competence, showing up-regulation of 12 of 16 genes that have been reported to affect transformation frequencies in this species. Comparison of CSP-induced S. gordonii transcriptomes to results published for Streptococcus pneumoniae strains identified both conserved and species-specific genes. Putative intergenic regulatory sites, such as the conserved combox sequence thought to be a binding site for competence sigma factor, were found preceding S. gordonii late responsive genes. In contrast, S. gordonii early CSP-responsive genes were not preceded by the direct repeats found in S. pneumoniae. These studies provide the first insights into a genome-wide transcriptional response of an oral commensal organism. They offer an extensive analysis of transcriptional changes that accompany competence in S. gordonii and form a basis for future intra- and interspecies comparative analyses of this ecologically important phenotype.

Indexed as

Genome, BacterialTranscription, GeneticBiofilmsChromosome MappingChromosomes, BacterialHumansKineticsOligonucleotide Array Sequence AnalysisRNA, BacterialStreptococcusToothRNA, Bacterial

Identifiers

PMID17720781
PMCPMC2168715
OpenAlexW2162752808

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.