ArticleJournal of the American Society for Mass Spectrometry2007
Algorithm for processing raw mass spectrometric data to identify and quantitate complex lipid molecular species in mixtures by data-dependent scanning and fragment ion database searching.
Article in Journal of the American Society for Mass Spectrometry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
31 citing papers in PubMed.
- Retinoids stored locally in the lung are required to attenuate the severity of acute lung injury in male mice.Nature communications · 2023Article
- A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics.Metabolites · 2022Review
- A lipidome atlas in MS-DIAL 4.Nature biotechnology · 2020Article
- Methods of the Analysis of Oxylipins in Biological Samples.Molecules (Basel, Switzerland) · 2020Review
- Exploring novel secondary metabolites from natural products using pre-processed mass spectral data.Scientific reports · 2019Article
- Tutorial on lipidomics.Analytica chimica acta · 2019Review
- Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values.BMC bioinformatics · 2019Article
- Mass spectrometry-based shotgun lipidomics - a critical review from the technical point of view.Analytical and bioanalytical chemistry · 2018Review
- Deciphering lipid structures based on platform-independent decision rules.Nature methods · 2017Article
- Lipidomics: Prospects from a technological perspective.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2017Review
- LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.BMC bioinformatics · 2017Article
- From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics.GigaScience · 2017Review
- Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.Analytical chemistry · 2016Article
- Applications of Fourier Transform Ion Cyclotron Resonance (FT-ICR) and Orbitrap Based High Resolution Mass Spectrometry in Metabolomics and Lipidomics.International journal of molecular sciences · 2016Review
- Comprehensive analysis of lipids in biological systems by liquid chromatography-mass spectrometry.Trends in analytical chemistry : TRAC · 2014Article
- LipidMiner: a software for automated identification and quantification of lipids from multiple liquid chromatography/mass spectrometry data files.Rapid communications in mass spectrometry : RCM · 2014Article
- Mass Spectrometry-based Lipidomics and Its Application to Biomedical Research.Journal of lifestyle medicine · 2014Review
- LipidBlast in silico tandem mass spectrometry database for lipid identification.Nature methods · 2013Article
- Review
- Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data.PloS one · 2013Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
We developed the Lipid Qualitative/Quantitative Analysis (LipidQA) software platform to identify and quantitate complex lipid molecular species in biological mixtures. LipidQA can process raw electronic data files from the TSQ-7000 triple stage quadrupole and LTQ linear ion trap mass spectrometers from Thermo-Finnigan and the Q-TOF hybrid quadrupole/time-of-flight instrument from Waters-Micromass and could readily be modified to accommodate data from others. The program processes multiple spectra in a few seconds and includes a deisotoping algorithm that increases the accuracy of structural identification and quantitation. Identification is achieved by comparing MS(2) spectra obtained in a data-dependent manner to a library of reference spectra of complex lipids that we have acquired or constructed from established fragmentation rules. The current form of the algorithm can process data acquired in negative or positive ion mode for glycerophospholipid species of all major head-group classes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.