Evidence map›Paper›PMID 17717707›Full record

ArticleHuman genetics2007

Polymorphic length of FOXE1 alanine stretch: evidence for genetic susceptibility to thyroid dysgenesis.

Aurore Carré, Mireille Castanet, Sylvia Sura-Trueba, Gabor Szinnai, Guy Van Vliet, Delphine Trochet, Jeanne Amiel, Juliane Léger, Paul Czernichow, Virginie Scotet and 1 more

Abstract read
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In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 69 citations in OpenAlex.

  1. Common genetic variants on FOXE1 contributes to thyroid cancer susceptibility: evidence based on 16 studies.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
  6. Article
  7. Disruption of theFrontiers in cell and developmental biology · 2023
    Article
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  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Gene Variants inJournal of pediatric genetics · 2019
    Article
  15. Article
  16. Article
  17. Mutations in BOREALIN cause thyroid dysgenesis.Human molecular genetics · 2017
    Article
  18. Case reports in genetics · 2017
    Article
  19. Article
  20. Molecular genetics of thyroid cancer.Genetics research · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Aurore CarréFaculty of Medicine René Descartes, Paris V, Site Necker, Institut National de la Santé et de la Recherche Médicale U845 and Pediatric Endocrine Unit Assistance Publique-Hôpitaux de PARIS, Hôpital Necker Enfants-Malades, Paris, France.
Mireille Castanet
Sylvia Sura-Trueba
Gabor Szinnai
Guy Van Vliet
Delphine Trochet
Jeanne Amiel
Juliane Léger
Paul Czernichow
Virginie Scotet
Michel Polak
Hôpital Necker-Enfants Malades · FRUniversité Paris Cité · FRAssistance Publique – Hôpitaux de Paris · FRInserm · FRUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Familial cases of congenital hypothyroidism from thyroid dysgenesis (TD) (OMIM 218700) occur with a frequency 15-fold higher than by chance, FOXE1 is one of the candidate genes for this genetic predisposition and contains an alanine tract. Our purpose is to assess the influence of length of the alanine tract of FOXE1 on genetic susceptibility to TD. A case-control association study (based on 115 patients affected by TD and 129 controls genotyped by direct sequencing) and transmission disequilibrium testing (TDT) analyses were performed. The transcriptional activities of FOXE1 constructs containing 14 or 16 alanines were also studied. In the case-control association study, the 16/16 and 16/14 genotypes were inversely associated with TD (OR = 0.39, 95%CI = 0.22-0.68, P = 0.0005), strongly suggesting that the presence of 16 alanines in the tract protect against the occurrence of TD. This association was stronger in the subgroup of patients with ectopic thyroid (OR = 0.28, 95%CI = 0.13-0.58, P = 0.00015). The protection was confirmed by the TDT analysis performed in 39 trios (chi(2) = 4.3, P = 0.0374). Alternatively, the presence of the 14/14 genotype is associated with an increase risk of TD (OR = 2.59, 95%CI = 1.56-4.62, P = 0.0005). The expression studies showed that the transcriptional activities of FOXE1 with 16 alanines were significantly higher (1.55-fold) than FOXE1 containing 14 alanines (P < 0.003), while the nuclear localisation of the proteins was not affected. We conclude that FOXE1 through its alanine containing stretch modulates significantly the risk of TD occurrence, enhancing a mechanism linking an alanine containing transcription factor to disease.

Indexed as

Base SequenceCase-Control StudiesCell LineCongenital HypothyroidismDNA PrimersFemaleForkhead Transcription FactorsGenetic Predisposition to DiseaseHumansMaleOdds RatioPeptidesPolymorphism, GeneticThyroid DysgenesisTransfectionDNA PrimersForkhead Transcription FactorsFOXE1 protein, humanPeptidespolyalanine

Identifiers

PMID17717707
OpenAlexW1988745308

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.