Evidence map›Paper›PMID 17713557›Full record

ArticleGenes and immunity2007

Genes at human chromosome 5q31.1 regulate delayed-type hypersensitivity responses associated with Leishmania chagasi infection.

S M B Jeronimo, A K B Holst, S E Jamieson, R Francis, D R A Martins, F L Bezerra, N A Ettinger, E T Nascimento, G R Monteiro, H G Lacerda and 6 more

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Human visceral leishmaniasis and polymorphisms in interleukin-coding genes: a systematic review.The journal of venomous animals and toxins including tropical diseases · 2024
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Clinical and Immunological Features of HumanPathogens (Basel, Switzerland) · 2020
    Article
  11. Article
  12. Frontiers in immunology · 2017
    Article
  13. Article
  14. Article
  15. Fine mapping under linkage peaks for symptomatic or asymptomatic outcomes of Leishmania infantum infection in Brazil.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

S M B JeronimoDepartment of Biochemistry, Federal University of Rio Grande do Norte, Natal, RN, Brazil.
A K B Holst
S E Jamieson
R Francis
D R A Martins
F L Bezerra
N A Ettinger
E T Nascimento
G R Monteiro
H G Lacerda
E N Miller
H J Cordell
P Duggal
T H Beaty
J M Blackwell
M E Wilson
Universidade Federal do Rio Grande do Norte · BRUniversity of Cambridge · GBUniversity of Iowa · USCentre for Life · GBJohns Hopkins University · USNational Institutes of Health · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
The role of Leishmania braziliensis strain polymorphism on disease outcome and ..P50AI030639 · NIAID · FEDERAL UNIVERSITY OF BAHIA · PI CARVALHO, EDGAR M · 1991 to 2023
$9.1M
Immunogenetics of Leishmania chagasi InfectionR01AI048822 · NIAID · UNIVERSITY OF IOWA · PI WILSON, MARY EDYTHE · 2001 to 2005
$3.2M
Protective Immunity to Leishmania chagasiR01AI045540 · NIAID · UNIVERSITY OF IOWA · PI WILSON, MARY E · 2001 to 2011
$3.1M
Genetic Risk Factors for Visceral LeishmaniasisR01AI076233 · NIAID · UNIVERSITY OF IOWA · PI BLACKWELL, JENEFER MARY, WILSON, MARY E · 2009 to 2013
$1.6M
Genetic Epidemiology of Complex TraitsZ01HG200327 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BAILEY-WILSON, JOAN ELLEN · 2005 to 2008
$1.3M
Intramural NIH HHSNIAID NIH HHS AI048822NIAID NIH HHS AI30639NIAID NIH HHS AI45540NIAID NIH HHS P50 AI030639NIAID NIH HHS R01 AI045540NIAID NIH HHS R01 AI048822NIAID NIH HHS R01 AI076233NIGMS NIH HHS T32 GM007337Wellcome Trust 074196
6 · The paper itself

Abstract

Visceral leishmaniasis (VL) caused by Leishmania chagasi is endemic to northeast Brazil. A positive delayed-type hypersensitivity skin test response (DTH+) is a marker for acquired resistance to disease, clusters in families and may be genetically controlled. Twenty-three single nucleotide polymorphisms (SNPs) were genotyped in the cytokine 5q23.3-q31.1 region IRF1-IL5-IL13-IL4-IL9-LECT2-TGFBI in 102 families (323 DTH+; 190 DTH-; 123 VL individuals) from a VL endemic region in northeast Brazil. Data from 20 SNPs were analyzed for association with DTH+/- status and VL using family-based, stepwise conditional logistic regression analysis. Independent associations were observed between the DTH+ phenotype and markers in separate linkage disequilibrium blocks in LECT2 (OR 2.25; P=0.005; 95% CI=1.28-3.97) and TGFBI (OR 1.94; P=0.003; 95% CI=1.24-3.03). VL child/parent trios gave no evidence of association, but the DTH- phenotype was associated with SNP rs2070874 at IL4 (OR 3.14; P=0.006; 95% CI=1.38-7.14), and SNP rs30740 between LECT2 and TGFBI (OR 3.00; P=0.042; 95% CI=1.04-8.65). These results indicate several genes in the immune response gene cluster at 5q23.3-q31.1 influence outcomes of L. chagasi infection in this region of Brazil.

Indexed as

Leishmania infantumPolymorphism, Single NucleotideAllelesAnimalsBrazilCase-Control StudiesChromosomes, Human, Pair 5Computational BiologyFemaleGenetic Predisposition to DiseaseGenotypeHumansHypersensitivity, DelayedLeishmaniasis, VisceralLogistic ModelsMale

Identifiers

PMID17713557
PMCPMC2435172
OpenAlexW2017977290

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.