Evidence map›Paper›PMID 17705828›Full record

ArticleBMC molecular biology2007

Inactivation of NMD increases viability of sup45 nonsense mutants in Saccharomyces cerevisiae.

Svetlana Chabelskaya, Valentina Gryzina, Svetlana Moskalenko, Catherine Le Goff, Galina Zhouravleva

Abstract read
In one paragraph

Article in BMC molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Svetlana ChabelskayaDepartment of Genetics and Breeding, St Petersburg State University, Universitetskaya emb, 7/9, 199034, St Petersburg, Russia. shabels@mail.ru
Valentina Gryzina
Svetlana Moskalenko
Catherine Le Goff
Galina Zhouravleva

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe nonsense-mediated mRNA decay (NMD) pathway promotes the rapid degradation of mRNAs containing premature termination codons (PTCs). In yeast Saccharomyces cerevisiae, the activity of the NMD pathway depends on the recognition of the PTC by the translational machinery. Translation termination factors eRF1 (Sup45) and eRF3 (Sup35) participate not only in the last step of protein synthesis but also in mRNA degradation and translation initiation via interaction with such proteins as Pab1, Upf1, Upf2 and Upf3.

resultsIn this work we have used previously isolated sup45 mutants of S. cerevisiae to characterize degradation of aberrant mRNA in conditions when translation termination is impaired. We have sequenced his7-1, lys9-A21 and trp1-289 alleles which are frequently used for analysis of nonsense suppression. We have established that sup45 nonsense and missense mutations lead to accumulation of his7-1 mRNA and CYH2 pre-mRNA. Remarkably, deletion of the UPF1 gene suppresses some sup45 phenotypes. In particular, sup45-n upf1Delta double mutants were less temperature sensitive, and more resistant to paromomycin than sup45 single mutants. In addition, deletion of either UPF2 or UPF3 restored viability of sup45-n double mutants.

conclusionThis is the first demonstration that sup45 mutations do not only change translation fidelity but also acts by causing a change in mRNA stability.

Indexed as

Adaptor Proteins, Signal TransducingBase SequenceCodon, NonsenseDown-RegulationGene DeletionGene Expression Regulation, FungalMolecular Sequence DataPeptide Termination FactorsPhenotypeRNA-Binding ProteinsRNA HelicasesRNA, MessengerRNA StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTrans-ActivatorsAdaptor Proteins, Signal TransducingCodon, NonsenseNAM7 protein, S cerevisiaeNMD2 protein, S cerevisiaePeptide Termination FactorsRNA-Binding ProteinsRNA HelicasesRNA, MessengerSaccharomyces cerevisiae ProteinsSUP45 protein, S cerevisiaeTrans-ActivatorsUPF3 protein, S cerevisiae

Identifiers

PMID17705828
PMCPMC2039749

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.