ReviewCurrent opinion in plant biology2007
Mapping the genome landscape using tiling array technology.
Review in Current opinion in plant biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed, 66 citations in OpenAlex.
- What's Wrong in a Jump? Prediction and Validation of Splice Site Variants.Methods and protocols · 2021Review
- Anno genominis XX: 20 years of Arabidopsis genomics.The Plant cell · 2021Review
- Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application.Journal of hematology & oncology · 2020Review
- A Brief Overview of lncRNAs in Endothelial Dysfunction-Associated Diseases: From Discovery to Characterization.Epigenomes · 2019Review
- An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK!Methods in molecular biology (Clifton, N.J.) · 2019Article
- Long non-coding RNAs in hematological malignancies: translating basic techniques into diagnostic and therapeutic strategies.Journal of hematology & oncology · 2018Review
- The crucial role of multiomic approach in cancer research and clinically relevant outcomes.The EPMA journal · 2018Review
- The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping.Frontiers in plant science · 2015Review
- Role of CpG deserts in the epigenetic transgenerational inheritance of differential DNA methylation regions.BMC genomics · 2014Article
- Genomics approaches for crop improvement against abiotic stress.TheScientificWorldJournal · 2013Review
- Genome-wide survey of cold stress regulated alternative splicing in Arabidopsis thaliana with tiling microarray.PloS one · 2013Article
- Revealing the transcriptome landscape of mouse spermatogonial cells by tiling microarray.Methods in molecular biology (Clifton, N.J.) · 2012Article
- Empirical bayes model comparisons for differential methylation analysis.Comparative and functional genomics · 2012Article
- Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum.Plant physiology · 2011Article
- New approaches to Prunus transcriptome analysis.Genetica · 2011Article
- Deciphering transcription factor binding patterns from genome-wide high density ChIP-chip tiling array data.BMC proceedings · 2011Article
- Tiling array data analysis: a multiscale approach using wavelets.BMC bioinformatics · 2011Article
- The current state of chromatin immunoprecipitation.Molecular biotechnology · 2010Review
- Light signal transduction: an infinite spectrum of possibilities.The Plant journal : for cell and molecular biology · 2010Review
- A systematic approach to understand the functional consequences of non-protein coding risk regions.Cell cycle (Georgetown, Tex.) · 2010Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
With the availability of complete genome sequences for a growing number of organisms, high-throughput methods for gene annotation and analysis of genome dynamics are needed. The application of whole-genome tiling microarrays for studies of global gene expression is providing a more unbiased view of the transcriptional activity within genomes. For example, this approach has led to the identification and isolation of many novel non-protein-coding RNAs (ncRNAs), which have been suggested to comprise a major component of the transcriptome that have novel functions involved in epigenetic regulation of the genome. Additionally, tiling arrays have been recently applied to the study of histone modifications and methylation of cytosine bases (DNA methylation). Surprisingly, recent studies combining the analysis of gene expression (transcriptome) and DNA methylation (methylome) using whole-genome tiling arrays revealed that DNA methylation regulates the expression levels of many ncRNAs. Further capture and integration of additional types of genome-wide data sets will help to illuminate additional hidden features of the dynamic genomic landscape that are regulated by both genetic and epigenetic pathways in plants.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.